README.md

In soulong/AnnotationHub: a hub for rapid loading annotation data and providing functions to reproduce annotation data

AnnotationHub

this is a tiny hub for storing and rapid loading my NGS annotation data.

besides, it also provides several useful functions for how to produce annotaion datasets and how to convert genes between species.

Version: 1.0.0

Installation

You can install the released version of shinySeqDB from Github with:

devtools::install_github("soulong/AnnotationHub")

Example

This is a basic example which shows you how to solve a common problem:

library(AnnotationHub)
genes <- c("Gucy1a1", "Pten", "Zyx", "Zscan5b", "Dada")
ortholog_symbol_convert(genes, "mm", "symbol", toType=c("ensembl_gene_id", "symbol", "entrezgene"))

soulong/AnnotationHub documentation built on July 6, 2019, 3:17 a.m.