ortholog_symbol_convert: Title convert human mouse gene each other easily

In soulong/AnnotationHub: a hub for rapid loading annotation data and providing functions to reproduce annotation data

Description

Title convert human mouse gene each other easily

Usage

ortholog_symbol_convert(genes, from, fromType, toType = NULL,
  dataSource = NULL)

Arguments

genes	a vector contaning genes you want convert from
from	genes species, it must be hs or mm
fromType	genes type, it must be one of ensembl, symbol, entrezid
toType	gene type to be retrieved, if NULL, it's same as fromType, if defined, it must be one or more of ensembl_gene_id, external_gene_name, entrezgene
dataSource	if NULL, it will internal ortholog to finish conversion

Value

a dataframe containing genes fromType and retrieved toType

Examples

genes <- c("Gucy1a1", "Pten", "Zyx", "Zscan5b", "Dada")
ortholog_symbol_convert(genes, "mm", "symbol", toType=c("ensembl_gene_id", "symbol", "entrezgene"))

soulong/AnnotationHub documentation built on July 6, 2019, 3:17 a.m.