get_geneset_GO: get GO annotation

In soulong/annoHub: A package for create and store enrichment analysis database

Description

get GO annotation from bioconductor org.Xx.eg.db

Usage

get_geneset_GO(
  species = "hs",
  ontology = c("BP", "MF", "CC"),
  min_size = 5,
  max_size = 500,
  evidence_exclude = c("NAS", "NR", "ND", "IEA")
)

Arguments

species	character, must be one of hs, mm
ontology	character, GO ontology to keep, one or more of "BP","MF","CC"
min_size	integer, minimal set size
max_size	integer, maxium set size
evidence_exclude	character, excluded GO evidence, refer to http://geneontology.org/docs/guide-go-evidence-codes/

Value

tibble

soulong/annoHub documentation built on May 12, 2020, 7:22 a.m.