check_qsm_multistem: Correction of QSM for multistem trees.

In spatial-mk/tre3d: Antarctic Pinguin Measurements

Description

Correction of QSM for multistem trees.

Usage

check_qsm_multistem(
  qsm = "cyl_data*.txt",
  bifurcation_threshold = 1.5,
  percentage = 40,
  diameter_treshold = 0.035,
  min_tree_height = 2,
  plot_orders = F,
  plot_parts = F,
  replace_qsm = F
)

Arguments

qsm	A file containing a QSM, e.g. cyl_data_*.txt
bifurcation_threshold	Height threshold (in meter) under which bifurcation of an additional trunk is allowed. Default 1.5
percentage	Percentage difference in radius between potential new trunk and main trunk. Default 40.0
diameter_treshold	Minimum diameter (in meter) threhold for potential additional trunks. Default 0.035
min_tree_height	Minimum tree height for searching for additional trunks. Default 2.0
plot_orders	Plot branching orders original and checked QSM. Default to FALSE
plot_parts	QSM for each detected stem (column tree_part). Default to FALSE
replace_qsm	Should input QSM file be replaced. If FALSE _multistem.txt is added to file name. Default to FALSE

Value

The path to the corrected QSM file.

Author(s)

Matthias Kunz, last updated: 27.04.2019

Examples

check_qsm_multistem("cyl_data*.txt", 1.5, 40.0, 0.035, 2.0, FALSE, FALSE, FALSE)

spatial-mk/tre3d documentation built on April 1, 2020, 5:26 p.m.