| bic_from_fit | Calculates the BIC score from a fit result. |
| bic_score | Calculates the BIC score. |
| convert_para | Convert parameters in the abk parametrization to pms... |
| CPSS_control | Returns the graph with desired FDR/freq from a path of CPSS... |
| CPSS_fit | Applies a fit function repeatedly to subsamples drawn as... |
| CPSS_path | Generates a path of estimates of adjacency matrix using... |
| DAG_eq | Returns if the DAGs corresponding to two adjacency matrices... |
| full_design1 | Design matrix for pms parametrization given the max degree of... |
| generate_one_each_a_b_k | Generates one sample for each triplet of (a, b) with a fixed... |
| generate_one_each_logitp_mu_sigmasq | Generates one sample for each triplet of (log_odd, mu) with a... |
| gen_zero_dat | Generates a sample zero-inflated data matrix. |
| grad_a_b_k | Gradient of log_dhurdle1d_abk() (with scalar v and y) with... |
| grad_full_vec | Gradient of log_dhurdle1d_abk() (with scalar v and y) with... |
| log_dhurdle1d_abk | Calculates the mean log probability of a vector of i.i.d. 1-d... |
| log_dhurdle1d_pms | Calculates the mean log probability of a vector of i.i.d. 1-d... |
| log_dhurdle_vec_abk | Calculates the mean log probability of a vector of 1-d Hurdle... |
| logsumexp_vec | Calculates mean(log(1+exp(xs))) of a vector xs. |
| make_dag | Returns the adjacency matrix of a chain, complete, or a... |
| mle1d_abk | Fits MLE for 1-d Hurdle model under the abk parametrization. |
| rand_init_dags | Randomly generates DAGs of specified sparsity. |
| rhurdle1d_abk | Generates samples from the abk parametrization. |
| rhurdle1d_pms | Generates samples from the pms parametrization. |
| sum_a | Calculate the a parameter in the conditional Hurdle density... |
| sum_A_mat | Calculate the a parameter in the conditional Hurdle density... |
| sum_b | Calculate the b parameter in the conditional Hurdle density... |
| sum_B_mat | Calculate the b parameter in the conditional Hurdle density... |
| zi_fit | Fits a Hurdle polynomial with either abk or pms... |
| zi_fit_abk | Fits a linear Hurdle conditional model with abk... |
| zi_fit_C | Fits the Hurdle model assuming linear abk parametrization... |
| zi_fit_lm | Performs unpenalized/ridge logistic/linear regression. |
| zi_fit_pms | Fits a Hurdle conditional model with pms parametrization of... |
| zi_fit_pms_choose_degree | Fits and chooses a Hurdle conditional model with pms... |
| zi_fit_R | Fits the Hurdle model assuming linear abk parametrization... |
| ziGDS | Greedy DAG search for DAGs for zero-inflated data based on... |
| ziSIMY | Exhaustive search using BIC for DAGs for zero-inflated data... |
