download_schic: Download existing single-cell raw data

In sshen82/BandNorm: BandNorm Method for single-cell Hi-C

Download existing single-cell raw data

Description

This function allows you to download the currently existing single cell Hi-C data. The data is 1mb resolution, and there are basic information for each of the cell, such as cell type, batch, etc.

Usage

download_schic(cell_line, cell_type = NULL, cell_path, summary_path = NULL)

Arguments

cell_line	Must be one of "Kim2020", "Lee2019", "Li2019", "Ramani2017".
cell_type	If you need to download a specific cell-type from one cell line, indicate the name of the cell-type in here.
cell_path	Indicate the output path for raw data.
summary_path	Indicate the output path for summary data containing information of batch, cell type, depth and sparsity. Default is NULL.

Examples

# download_schic("Li2019", cell_path = getwd())

sshen82/BandNorm documentation built on June 1, 2025, 6:25 p.m.