CloNcaSe-package: Estimation of effective size and sex rate of a partially...
In ssoubeyrand/CloNcaSe: Estimation of Effective Size and Sex Rate of a Partially Clonal Population
Description
Details
Author(s)
References
See Also
Examples
Description
CloNcaSe: Nc (effective size) and s (sex rate) estimator. Code to estimate effective size (Nc) and sex rate (s) of a partially clonal population sampled at two different times. The samples are supposed to be separated by several clonal cycles and one mixed (i.e. sexual-clonal) cycle.
Details
Package: CloNcaSe
Type: Package
Version: 2.0
Date: 2015-07-07
License: GPL-3
The main function of this package is the function ncase.
Author(s)
Samuel Soubeyrand
Maintainer: Samuel Soubeyrand <Samuel.Soubeyrand@avignon.inra.fr>
References
Ali S, Soubeyrand S, Gladieux P, Giraud T, Leconte M, Gautier A, Mboup M, de Vallavieille-Pope C and Enjalbert J (2015). CloNcaSe: Estimation of sex frequency and effective population size by clonemate re-sampling in partially clonal organisms. Research Report.
See Also
Examples
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## Yellow rust data
data(yellowrust)
## Point estimates
ncase(yellowrust,nb1ClonalCycles=17,nb2ClonalCycles=7,
start=expand.grid(c(100,1000),c(0.2,0.8)))
ssoubeyrand/CloNcaSe documentation built on May 30, 2019, 8:43 a.m.
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Description Details Author(s) References See Also Examples
Description
CloNcaSe: Nc (effective size) and s (sex rate) estimator. Code to estimate effective size (Nc) and sex rate (s) of a partially clonal population sampled at two different times. The samples are supposed to be separated by several clonal cycles and one mixed (i.e. sexual-clonal) cycle.
Details
| Package: | CloNcaSe |
| Type: | Package |
| Version: | 2.0 |
| Date: | 2015-07-07 |
| License: | GPL-3 |
The main function of this package is the function ncase.
Author(s)
Samuel Soubeyrand
Maintainer: Samuel Soubeyrand <Samuel.Soubeyrand@avignon.inra.fr>
References
Ali S, Soubeyrand S, Gladieux P, Giraud T, Leconte M, Gautier A, Mboup M, de Vallavieille-Pope C and Enjalbert J (2015). CloNcaSe: Estimation of sex frequency and effective population size by clonemate re-sampling in partially clonal organisms. Research Report.
See Also
Examples
1 2 3 4 5 6 | ## Yellow rust data
data(yellowrust)
## Point estimates
ncase(yellowrust,nb1ClonalCycles=17,nb2ClonalCycles=7,
start=expand.grid(c(100,1000),c(0.2,0.8)))
|
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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