View source: R/countPeptides.R

Given a `protdata`

object, a dataframe pData containing experiment information and a predictor of interest,
returns a data frame giving the amount of peptides observed for each level of the predictor.

1 | ```
countPeptides(protdata, pData, predictor)
``` |

`protdata` |
A |

`pData` |
A dataframe that contains experimenter-supplied variables describing phenotypes and/or experimental factors that might influence the quantitative value of interest for each mass spec run. The |

`predictor` |
A predictor for which you would like to summarize the number of identified peptides per level for each protein. This predictor should correspond to one element of the |

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