Man pages for statOmics/msqrob2
Robust statistical inference for quantitative LC-MS proteomics
| data | Example data for 100 proteins |
| hypothesisTest | Parameter estimates, standard errors and statistical... |
| makeContrast | Make contrast matrix |
| msqrob | Methods to fit msqrob models with ridge regression and/or... |
| msqrobAggregate | Method to fit msqrob models with robust regression and/or... |
| msqrobGlm | Function to fit msqrob models to peptide counts using glm |
| msqrobHurdle | Function to fit msqrob hurdle models |
| msqrobLm | Function to fit msqrob models using lm and rlm |
| msqrobLmer | Function to fit msqrob models with ridge regression and/or... |
| msqrobQB | Function to fit msqrob models to peptide counts using glm |
| smallestUniqueGroups | Smallest unique protein groups |
| StatModel | The StatModel class for msqrob |
| statModelAccessors | Accessor functions for StatModel class |
| statModelMethods | Methods for StatModel class |
| topTable | Toplist of DE proteins, peptides or features |
