smallestUniqueGroups: Smallest unique protein groups

In statOmics/msqrob2: Robust statistical inference for quantitative LC-MS proteomics

Smallest unique protein groups

Description

For a given vector of protein group names, outputs the names of those protein groups for which none of its member proteins is present in a smaller protein group.

Usage

smallestUniqueGroups(proteins, split = ";")

Arguments

proteins	A vector of characters or factors containing single proteins and/or protein groups (i.e. proteins separated by a separator symbol).
split	The character string that is used to separate the indivudual protein names in each protein group.

Value

A character vector containing the names of the protein groups for which none of its proteins is present in a smaller protein group.

Examples

data(pe)
smallestUniqueGroups(rowData(pe[["peptide"]])$Proteins)

statOmics/msqrob2 documentation built on Dec. 21, 2024, 8:26 a.m.