Man pages for statOmics/stageR
stageR: stage-wise analysis of high throughput gene expression data in R

adjustedAlphaLevelGet adjusted significance level from the screening stage.
esetProstateTranscript-level abundance estimates in 14 Chinese prostate...
getAdjustedPValuesRetrieve the stage-wise adjusted p-values.
getAlphaRetrieve the significance level for the stage-wise...
getMethodRetrieve FWER correction method.
getPConfirmationReturn unadjusted confirmation hypothesis p-values from a...
getPScreenReturn screening hypothesis p-values from a 'stageRClass'...
getResultsGet significance results according to a stage-wise analysis.
getSignificantGenesReturn significant genes when performing transcript-level...
getSignificantTxReturn significant transcripts when performing...
getTx2geneRetrieve the data frame linking genes to transcripts.
hammer.esetHammer dataset
isAdjustedHas stage-wise adjustment already been performed on the...
isPScreenAdjustedAre the screening p-values adjusted for multiplicity?
stageRCreate stageR object
stageRClassThe stageR class
stageRTxCreate stageRTx object.
stageWiseAdjustmentadjust p-values in a two-stage analysis
statOmics/stageR documentation built on Oct. 29, 2017, 2:18 p.m.