getPScreen: Return screening hypothesis p-values from a 'stageRClass'...

Description Usage Arguments Value Methods (by class) Examples

Description

Return screening hypothesis p-values from a stageRClass object.

Usage

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getPScreen(object, ...)

## S4 method for signature 'stageR'
getPScreen(object)

## S4 method for signature 'stageRTx'
getPScreen(object)

Arguments

object

an object of the stageRClass class.

...

Additional arguments

Value

A vector of screening stage (aggregated) p-values.

Methods (by class)

Examples

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pScreen=c(seq(1e-10,1e-2,length.out=100),seq(1e-2,.2,length.out=100),seq(.2,1,length.out=100))
names(pScreen)=paste0("gene",1:300)
pConfirmation=matrix(runif(900),nrow=300,ncol=3)
dimnames(pConfirmation)=list(paste0("gene",1:300),c("H1","H2","H3"))
stageRObj <- stageR(pScreen=pScreen, pConfirmation=pConfirmation)
getPScreen(stageRObj)

statOmics/stageR documentation built on Dec. 15, 2021, 2:58 a.m.