update_f: Function for updating f

In statdivlab/happi: a hierarchical approach to pangenomics inference

Function for updating f

Description

Function for updating f

Usage

update_f(
  probs,
  tuning_param = 50,
  method,
  spline_df,
  outcome,
  nn = nn,
  quality_var,
  tt = tt
)

Arguments

probs	outcomes p; probability between 0 and 1
tuning_param	tuning parameter. default set to 50
method	method for updating f. Can specify either isotone or splines. default splines.
spline_df	degrees of freedom for splines. default 3.
outcome	length n vector; this is the vector of a target gene's presence/absence; should be coded as 0 or 1
nn	length of outcome vector
quality_var	length-n vector; this is the quality variable vector, currently p = 1
tt	E-M iteration

Value

vector of estimated f's

statdivlab/happi documentation built on April 19, 2024, 2:04 a.m.