dataframes_to_parameters: Convert parameter values stored in data frame format to...

In statdivlab/tinyvamp: Modeling complex measurement error in microbiome experiments

Convert parameter values stored in data frame format to matrix format

Description

Convert parameter values stored in data frame format to matrix format

Usage

dataframes_to_parameters(fixed_df, varying_df)

Arguments

fixed_df	A dataframe containing values of model parameters treated as fixed and known (i.e. held constant at known values)
varying_df	A dataframe containing current values of model parameters treated as fixed and unknown (i.e., parameters to be estimated)

Value

A list containing

P	Specimen relative abundance matrix (of dimension K x J)
P_tilde	Spurious read source relative abundance matrix (of dimension K-tilde x J)
B	A matrix of detection efficiencies (of dimension p x J)
gammas	An n-vector of sample-specific read intensities
gamma_tilde	A-vector of spurious read source intensities (of length K-tilde)

Author(s)

David Clausen

statdivlab/tinyvamp documentation built on July 28, 2023, 11:21 p.m.