mu_d_rho_faster: Calculate derivative of mu_ij with respect to a row of...

In statdivlab/tinyvamp: Modeling complex measurement error in microbiome experiments

Calculate derivative of mu_ij with respect to a row of matrix-valued parameter rho

Description

Calculate derivative of mu_ij with respect to a row of matrix-valued parameter rho

Usage

mu_d_rho_faster(
  i,
  J,
  k,
  gammas,
  B,
  X,
  Z,
  Ak_list,
  rho_k,
  fixed_P_multipliers,
  proportion_scale = FALSE
)

Arguments

i	The sample index (must be in 1, ..., n)
J	The total number of taxa modeled
k	Row index (which row of rho with respect to which to take derivative)
gammas	Numeric vector of read intensities
B	Detection efficiency matrix
X	The efficiency design matrix (n x p)
Z	The sample design matrix (n x K)
Ak_list	List containing matrices that map back-transformed rho to entries of P
rho_k	Value of kth row of rho
fixed_P_multipliers	Numeric vector of length K containing values in (0,1] equal to 1 - sum(fixed relative abundances in row k of P) Z_tilde to scale by exp(gamma); NULL if no columns to be scaled

Value

A derivative d mu_i / d rho_k

statdivlab/tinyvamp documentation built on July 28, 2023, 11:21 p.m.