statgenlmu/coala: A Framework for Coalescent Simulation

Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results. It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'.

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version0.5.2
URL https://github.com/statgenlmu/coala
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("statgenlmu/coala")
statgenlmu/coala documentation built on July 5, 2018, 8:44 p.m.