simulator_msms | R Documentation |
This adds the simulator 'msms' to the list of available simulators. To add msms, you need to download the jar file and have Java installed on your system.
activate_msms(jar = NULL, java = NULL, priority = 200, download = FALSE)
jar |
The path of the msms jar file. |
java |
The path of the java executable on your system. |
priority |
The priority for this simulator. If multiple simulators can simulate a model, the one with the highest priority will be used. |
download |
If set to |
Gregory Ewing and Joachim Hermisson. MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics (2010) 26 (16): 2064-2065 doi:10.1093/bioinformatics/btq322
Other simulators:
simulator_ms
,
simulator_scrm
,
simulator_seqgen
# Download and activate msms (requires Java)
## Not run: activate_msms(download = TRUE)
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