network: Classes for Relational Data

BasketballAnalyzeR

Version: 0.5.0
GitHub: https://github.com/sndmrc/BasketballAnalyzeR
Source code: https://github.com/cran/BasketballAnalyzeR
Date/Publication: 2020-06-26 09:00:11 UTC
Number of recursive dependencies: 76

Run revdep_details(, "BasketballAnalyzeR") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘circlize’ ‘hexbin’ ‘scales’ ‘sna’ All declared Imports should be used.

BGGM

Version: 2.0.4
GitHub: https://github.com/donaldRwilliams/BGGM
Source code: https://github.com/cran/BGGM
Date/Publication: 2021-08-20 15:50:06 UTC
Number of recursive dependencies: 167

Run revdep_details(, "BGGM") for more info

checking installed package size ... NOTE installed size is 12.8Mb sub-directories of 1Mb or more: doc 3.8Mb help 1.1Mb libs 7.2Mb

bingat

Version: 1.3
GitHub: NA
Source code: https://github.com/cran/bingat
Date/Publication: 2017-07-05 18:30:37 UTC
Number of recursive dependencies: 32

Run revdep_details(, "bingat") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘genalg’

Blaunet

Version: 2.2.1
GitHub: NA
Source code: https://github.com/cran/Blaunet
Date/Publication: 2022-09-27 08:10:08 UTC
Number of recursive dependencies: 65

Run revdep_details(, "Blaunet") for more info

checking package dependencies ... ERROR ``` Package required but not available: ‘gWidgets2tcltk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

bootcluster

Version: 0.3.2
GitHub: NA
Source code: https://github.com/cran/bootcluster
Date/Publication: 2022-01-29 22:50:03 UTC
Number of recursive dependencies: 69

Run revdep_details(, "bootcluster") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘sna’ All declared Imports should be used.

broom

Version: 1.0.1
GitHub: https://github.com/tidymodels/broom
Source code: https://github.com/cran/broom
Date/Publication: 2022-08-29 21:00:08 UTC
Number of recursive dependencies: 292

Run revdep_details(, "broom") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'epiR', 'spdep', 'spatialreg'
checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘spatialreg’, ‘epiR’

CEMiTool

Version: 1.20.0
GitHub: NA
Source code: https://github.com/cran/CEMiTool
Date/Publication: 2022-04-26
Number of recursive dependencies: 194

Run revdep_details(, "CEMiTool") for more info

checking installed package size ... NOTE installed size is 8.9Mb sub-directories of 1Mb or more: data 3.1Mb doc 2.3Mb extdata 2.8Mb
checking R code for possible problems ... NOTE flip_vector: no visible global function definition for ‘setNames’ select_genes: no visible global function definition for ‘var’ get_hubs,CEMiTool : <anonymous>: no visible global function definition for ‘head’ get_merged_mods,CEMiTool: no visible global function definition for ‘as.dist’ get_mods,CEMiTool: no visible global function definition for ‘as.dist’ get_phi,CEMiTool: no visible global function definition for ‘tail’ get_phi,CEMiTool: no visible global function definition for ‘head’ mod_gene_num,CEMiTool: no visible binding for global variable ‘modules’ ... save_plots,CEMiTool: no visible global function definition for ‘dev.off’ Undefined global functions or variables: ..eq.label.. ..rr.label.. := Mean Variance as.dist data dev.off dist head modules num_genes setNames tail var Consider adding importFrom("grDevices", "dev.off") importFrom("stats", "as.dist", "dist", "setNames", "var") importFrom("utils", "data", "head", "tail") to your NAMESPACE file.

CeTF

Version: 1.8.0
GitHub: NA
Source code: https://github.com/cran/CeTF
Date/Publication: 2022-04-26
Number of recursive dependencies: 228

Run revdep_details(, "CeTF") for more info

checking re-building of vignette outputs ...sh: line 1: 247279 Killed '/srv/scratch/z3528859/R-4.2.0/bin/R' --vanilla --no-echo > '/srv/scratch/z3528859/github/statnet/network/revdep/checks/CeTF/old/CeTF.Rcheck/build_vignettes.log' 2>&1 < '/scratch/pbs.3584821.kman.restech.unsw.edu.au/Rtmp5JkIUj/file375426c1496a9' ``` ERROR Error(s) in re-building vignettes: --- re-building ‘CeTF.Rmd’ using rmarkdown

======================================== CeTF version 1.8.0 Bioconductor page: http://bioconductor.org/packages/CeTF/ Github page: https://github.com/cbiagii/CeTF or https://cbiagii.github.io/CeTF/ Documentation: http://bioconductor.org/packages/CeTF/ If you use it in published research, please cite: ... count

The following objects are masked from 'package:stats':
```
filter, lag
```
The following objects are masked from 'package:base':
```
intersect, setdiff, setequal, union
```
```

checking installed package size ... NOTE installed size is 7.6Mb sub-directories of 1Mb or more: data 1.5Mb doc 3.0Mb libs 2.5Mb

chorrrds

Version: 0.1.9.5
GitHub: https://github.com/r-music/chorrrds
Source code: https://github.com/cran/chorrrds
Date/Publication: 2020-06-30 17:30:02 UTC
Number of recursive dependencies: 72

Run revdep_details(, "chorrrds") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘forcats’ All declared Imports should be used.
checking data for non-ASCII characters ... NOTE Note: found 4004 marked UTF-8 strings

CINNA

Version: 1.2.0
GitHub: NA
Source code: https://github.com/cran/CINNA
Date/Publication: 2022-04-07 15:12:31 UTC
Number of recursive dependencies: 145

Run revdep_details(, "CINNA") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘circlize’ All declared Imports should be used.

CluMSID

Version: 1.12.0
GitHub: https://github.com/tdepke/CluMSID
Source code: https://github.com/cran/CluMSID
Date/Publication: 2022-04-26
Number of recursive dependencies: 182

Run revdep_details(, "CluMSID") for more info

checking package dependencies ... ERROR ``` Package required but not available: ‘MSnbase’

Packages suggested but not available for checking: 'metaMS', 'xcms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

conserveR

Version: 1.0.4
GitHub: https://github.com/azizka/conserveR
Source code: https://github.com/cran/conserveR
Date/Publication: 2021-08-02 09:10:06 UTC
Number of recursive dependencies: 51

Run revdep_details(, "conserveR") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘scales’ ‘sna’ All declared Imports should be used.
checking data for non-ASCII characters ... NOTE Note: found 244 marked UTF-8 strings

edgebundle

Version: 0.4.0
GitHub: https://github.com/schochastics/edgebundle
Source code: https://github.com/cran/edgebundle
Date/Publication: 2022-07-05 00:10:10 UTC
Number of recursive dependencies: 53

Run revdep_details(, "edgebundle") for more info

checking data for non-ASCII characters ... NOTE Note: found 22 marked UTF-8 strings

ergm

Version: 4.2.2
GitHub: https://github.com/statnet/ergm
Source code: https://github.com/cran/ergm
Date/Publication: 2022-06-01 12:00:04 UTC
Number of recursive dependencies: 89

Run revdep_details(, "ergm") for more info

checking installed package size ... NOTE installed size is 8.3Mb sub-directories of 1Mb or more: R 1.1Mb doc 1.7Mb libs 3.8Mb

ergMargins

Version: 0.1.3
GitHub: NA
Source code: https://github.com/cran/ergMargins
Date/Publication: 2021-06-30 07:40:02 UTC
Number of recursive dependencies: 58

Run revdep_details(, "ergMargins") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘methods’ ‘sna’ ‘statnet.common’ All declared Imports should be used.
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘margins’

ergmito

Version: 0.3-0
GitHub: https://github.com/muriteams/ergmito
Source code: https://github.com/cran/ergmito
Date/Publication: 2020-08-10 21:40:02 UTC
Number of recursive dependencies: 65

Run revdep_details(, "ergmito") for more info

checking installed package size ... NOTE installed size is 7.1Mb sub-directories of 1Mb or more: libs 5.7Mb

fcoex

Version: 1.10.0
GitHub: NA
Source code: https://github.com/cran/fcoex
Date/Publication: 2022-04-26
Number of recursive dependencies: 298

Run revdep_details(, "fcoex") for more info

checking examples ... ERROR ``` Running examples in ‘fcoex-Ex.R’ failed The error most likely occurred in:

Name: mod_ora

Title: Over Representation Analysis (ORA)

Aliases: mod_ora mod_ora,fcoex-method

** Examples

data("fc") ... gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool") gmt_in <- pathwayPCA::read_gmt(gmt_fname) Warning in file(con, "rb") : file("") only supports open = "w+" and open = "w+b": using the former Warning in readChar(file, nchars = nChars, useBytes = TRUE) : text connection used with readChar(), results may be incorrect Error in readChar(file, nchars = nChars, useBytes = TRUE) : invalid 'nchars' argument Calls: -> readChar Execution halted ```
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘fcoex.Rmd’ using rmarkdown

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':
```
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
```
... Quitting from lines 67-75 (fcoex_and_seurat.Rmd) Error: processing vignette 'fcoex_and_seurat.Rmd' failed with diagnostics: invalid 'nchars' argument --- failed re-building ‘fcoex_and_seurat.Rmd’

SUMMARY: processing the following files failed: ‘fcoex.Rmd’ ‘fcoex_and_seurat.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking whether package ‘fcoex’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘Matrix::head’ by ‘utils::head’ when loading ‘fcoex’ See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/fcoex/new/fcoex.Rcheck/00install.out’ for details.
checking Rd \usage sections ... WARNING ``` Documented arguments not in \usage in documentation object '.plot_one_interaction': ‘...’

Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. ```
checking package dependencies ... NOTE Packages suggested but not available for checking: 'TENxPBMCData', 'schex'

fssemR

Version: 0.1.8
GitHub: https://github.com/Ivis4ml/fssemR
Source code: https://github.com/cran/fssemR
Date/Publication: 2022-02-11 13:00:02 UTC
Number of recursive dependencies: 87

Run revdep_details(, "fssemR") for more info

checking installed package size ... NOTE installed size is 15.2Mb sub-directories of 1Mb or more: libs 14.5Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘qpdf’ All declared Imports should be used.

geomnet

Version: 0.3.1
GitHub: https://github.com/sctyner/geomnet
Source code: https://github.com/cran/geomnet
Date/Publication: 2020-11-26 11:00:06 UTC
Number of recursive dependencies: 98

Run revdep_details(, "geomnet") for more info

checking examples ... ERROR ``` Running examples in ‘geomnet-Ex.R’ failed The error most likely occurred in:

Name: football

Title: College football games network (undirected)

Aliases: football

Keywords: datasets

** Examples

... + scale_colour_brewer("Conference", palette = "Paired") Error: loops is FALSE, but x contains loops. The following values are affected: - x[604, 1:2] - x[605, 1:2] - x[610, 1:2] - x[615, 1:2] - x[617, 1:2] - x[618, 1:2] Execution halted ```
checking re-building of vignette outputs ... ERROR `` Error(s) in re-building vignettes: ... --- re-building ‘geomnet-vignette.Rmd’ using rmarkdown Quitting from lines 15-112 (geomnet-vignette.Rmd) Error: processing vignette 'geomnet-vignette.Rmd' failed with diagnostics: The first two columns ofx` must be of the same type. --- failed re-building ‘geomnet-vignette.Rmd’

SUMMARY: processing the following file failed: ‘geomnet-vignette.Rmd’

Error: Vignette re-building failed. Execution halted ```

GGally

Version: 2.1.2
GitHub: https://github.com/ggobi/ggally
Source code: https://github.com/cran/GGally
Date/Publication: 2021-06-21 04:40:10 UTC
Number of recursive dependencies: 147

Run revdep_details(, "GGally") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘scagnostics’

GGMncv

Version: 2.1.1
GitHub: https://github.com/donaldRwilliams/GGMncv
Source code: https://github.com/cran/GGMncv
Date/Publication: 2021-12-15 07:40:28 UTC
Number of recursive dependencies: 152

Run revdep_details(, "GGMncv") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘Rdpack’ ‘mathjaxr’ All declared Imports should be used.

GGMnonreg

Version: 1.0.0
GitHub: NA
Source code: https://github.com/cran/GGMnonreg
Date/Publication: 2021-04-08 11:30:06 UTC
Number of recursive dependencies: 112

Run revdep_details(, "GGMnonreg") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘Matrix’ ‘Rdpack’ All declared Imports should be used.

ggnetwork

Version: 0.5.10
GitHub: https://github.com/briatte/ggnetwork
Source code: https://github.com/cran/ggnetwork
Date/Publication: 2021-07-06 05:30:02 UTC
Number of recursive dependencies: 70

Run revdep_details(, "ggnetwork") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘sna’ ‘utils’ All declared Imports should be used.

GGPA

Version: 1.8.0
GitHub: https://github.com/dongjunchung/GGPA
Source code: https://github.com/cran/GGPA
Date/Publication: 2022-04-26
Number of recursive dependencies: 74

Run revdep_details(, "GGPA") for more info

checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: doc 1.6Mb libs 3.9Mb
checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘network’ ‘scales’ ‘sna’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached.
checking compiled code ... NOTE ``` File ‘GGPA/libs/GGPA.so’: Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++) Object: ‘3_Param.o’

Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. ```

ggraph

Version: 2.0.6
GitHub: https://github.com/thomasp85/ggraph
Source code: https://github.com/cran/ggraph
Date/Publication: 2022-08-08 11:40:02 UTC
Number of recursive dependencies: 96

Run revdep_details(, "ggraph") for more info

checking installed package size ... NOTE installed size is 8.9Mb sub-directories of 1Mb or more: doc 3.6Mb libs 4.0Mb

GOxploreR

Version: 1.2.6
GitHub: NA
Source code: https://github.com/cran/GOxploreR
Date/Publication: 2022-04-19 14:02:33 UTC
Number of recursive dependencies: 114

Run revdep_details(, "GOxploreR") for more info

checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: R 6.1Mb

GRENITS

Version: 1.48.0
GitHub: NA
Source code: https://github.com/cran/GRENITS
Date/Publication: 2022-04-26
Number of recursive dependencies: 38

Run revdep_details(, "GRENITS") for more info

checking installed package size ... NOTE installed size is 10.9Mb sub-directories of 1Mb or more: libs 10.6Mb
checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Rcpp’ ‘RcppArmadillo’ ‘ggplot2’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached.
checking R code for possible problems ... NOTE .heatMap.ggplot: no visible global function definition for ‘ggplot’ .heatMap.ggplot: no visible global function definition for ‘aes’ .heatMap.ggplot: no visible binding for global variable ‘Var2’ .heatMap.ggplot: no visible binding for global variable ‘Var1’ .heatMap.ggplot: no visible global function definition for ‘geom_tile’ .heatMap.ggplot: no visible binding for global variable ‘value’ .heatMap.ggplot: no visible global function definition for ‘scale_fill_gradient’ .heatMap.ggplot: no visible global function definition for ‘theme’ .heatMap.ggplot: no visible global function definition for ... .plotDistribParents.LargeMat: no visible global function definition for ‘scale_x_discrete’ .plotDistribParents.LargeMat: no visible global function definition for ‘scale_y_discrete’ .plotDistribParents.LargeMat: no visible global function definition for ‘facet_wrap’ Undefined global functions or variables: GeneNames Var1 Var2 aes element_blank element_text facet_wrap geom_tile ggplot ggtitle labs scale_fill_gradient scale_x_discrete scale_y_discrete theme value variable

gwdegree

Version: 0.1.1
GitHub: https://github.com/michaellevy/gwdegree
Source code: https://github.com/cran/gwdegree
Date/Publication: 2016-07-09 10:46:45
Number of recursive dependencies: 89

Run revdep_details(, "gwdegree") for more info

checking R code for possible problems ... NOTE simCCCent : <anonymous>: no visible global function definition for ‘simulate.formula’ Undefined global functions or variables: simulate.formula
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

ICON

Version: 0.4.0
GitHub: https://github.com/rrrlw/ICON
Source code: https://github.com/cran/ICON
Date/Publication: 2020-10-23 23:00:02 UTC
Number of recursive dependencies: 80

Run revdep_details(, "ICON") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ Skipped tests ═══════════════════════════════════════════════════════════════ • On CRAN (1)

══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure (test-s3-network.R:21:3): as.network.ICON generic works ───────────── network::get.edge.attribute(converted_network, "attrib") not equal to test_obj$attrib. Lengths differ: 21 is not 25 ── Failure (test-s3-network.R:24:3): as.network.ICON generic works ───────────── network::network.edgecount(converted_network) not equal to NROW. 1/1 mismatches [1] 21 - 25 == -4

[ FAIL 2 | WARN 0 | SKIP 1 | PASS 11 ] Error: Test failures Execution halted ```

InflectSSP

Version: 1.4.4
GitHub: NA
Source code: https://github.com/cran/InflectSSP
Date/Publication: 2022-03-18 14:40:02 UTC
Number of recursive dependencies: 84

Run revdep_details(, "InflectSSP") for more info

checking package dependencies ... ERROR ``` Package required but not available: ‘xlsx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

latentnet

Version: 2.10.6
GitHub: https://github.com/statnet/latentnet
Source code: https://github.com/cran/latentnet
Date/Publication: 2022-05-11 12:30:05 UTC
Number of recursive dependencies: 112

Run revdep_details(, "latentnet") for more info

checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

leiden

Version: 0.4.3
GitHub: https://github.com/TomKellyGenetics/leiden
Source code: https://github.com/cran/leiden
Date/Publication: 2022-09-10 17:22:53 UTC
Number of recursive dependencies: 146

Run revdep_details(, "leiden") for more info

checking tests ... ``` Running ‘spelling.R’ Running ‘testthat.R’/srv/scratch/z3528859/R-4.2.0/bin/BATCH: line 60: 67256 Killed ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output:

library("testthat") library("leiden") Unable to set up conda environment r-reticulate run in terminal: conda init conda create -n r-reticulate conda environment r-reticulate installed Unable to install python modules igraph and leidenalg run in terminal: conda install -n r-reticulate -c conda-forge vtraag python-igraph pandas umap learn python modules igraph and leidenalg installed

test_check("leiden") ```

R CMD check timed out

checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: doc 5.9Mb

lolog

Version: 1.3
GitHub: https://github.com/statnet/lolog
Source code: https://github.com/cran/lolog
Date/Publication: 2021-07-01 07:50:06 UTC
Number of recursive dependencies: 80

Run revdep_details(, "lolog") for more info

R CMD check timed out
checking installed package size ... NOTE installed size is 24.8Mb sub-directories of 1Mb or more: libs 23.1Mb

MBCbook

Version: 0.1.1
GitHub: NA
Source code: https://github.com/cran/MBCbook
Date/Publication: 2019-07-02 07:00:03 UTC
Number of recursive dependencies: 23

Run revdep_details(, "MBCbook") for more info

checking data for non-ASCII characters ... NOTE Note: found 66 marked UTF-8 strings

migraph

Version: 0.12.0
GitHub: https://github.com/snlab-ch/migraph
Source code: https://github.com/cran/migraph
Date/Publication: 2022-09-27 07:50:02 UTC
Number of recursive dependencies: 131

Run revdep_details(, "migraph") for more info

checking tests ... `` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure (test-viz_autographr.R:115:3): fancy node mods graph correctly ────── class(testcolnodes) not equal to c("ggraph", "gg", "ggplot"). Lengths differ: 1 is not 3 ── Error (test-viz_autographr.R:116:3): fancy node mods graph correctly ──────── Error inround(testcolnodes$data$x[1])`: non-numeric argument to mathematical function Backtrace: ▆
1. └─testthat::expect_equal(round(testcolnodes$data$x[1]), 4) at test-viz_autographr.R:116:2
2. └─testthat::quasi_label(enquo(object), label, arg = "object")
3. └─rlang::eval_bare(expr, quo_get_env(quo))
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 526 ] Error: Test failures Execution halted ```
checking package dependencies ... NOTE Package suggested but not available for checking: ‘concaveman’
checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: doc 3.0Mb

mpa

Version: 0.7.3
GitHub: NA
Source code: https://github.com/cran/mpa
Date/Publication: 2012-10-29 08:59:13
Number of recursive dependencies: 15

Run revdep_details(, "mpa") for more info

checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences.
checking R code for possible problems ... NOTE ``` NB: .First.lib is obsolete and will not be used in R >= 3.0.0 File ‘mpa/R/zzz.R’: .First.lib calls: cat("\n mpa: CoWords Method") cat("\n ") cat("\n Universidad Nacional de Colombia") cat("\n ") cat("\n Elaborado por: Daniel Rodriguez dhrodriguezt@unal.edu.co") cat("\n Campo Elias Pardo cepardot@unal.edu.co") cat("\n For help: ?mpa \n\n") ... generate messages. See section ‘Good practice’ in '?.onAttach'.

diagram.mpa: no visible global function definition for ‘abline’ diagram.mpa: no visible global function definition for ‘text’ Undefined global functions or variables: abline text Consider adding importFrom("graphics", "abline", "text") to your NAMESPACE file. ```
checking data for non-ASCII characters ... NOTE Note: found 6 marked UTF-8 strings

netdiffuseR

Version: 1.22.4
GitHub: https://github.com/USCCANA/netdiffuseR
Source code: https://github.com/cran/netdiffuseR
Date/Publication: 2022-09-20 07:46:13 UTC
Number of recursive dependencies: 79

Run revdep_details(, "netdiffuseR") for more info

checking installed package size ... NOTE installed size is 13.2Mb sub-directories of 1Mb or more: doc 2.5Mb libs 8.8Mb

nethet

Version: 1.28.0
GitHub: NA
Source code: https://github.com/cran/nethet
Date/Publication: 2022-04-26
Number of recursive dependencies: 102

Run revdep_details(, "nethet") for more info

checking whether package ‘nethet’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘mclust::dmvnorm’ by ‘mvtnorm::dmvnorm’ when loading ‘nethet’ Warning: replacing previous import ‘multtest::update’ by ‘stats::update’ when loading ‘nethet’ See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/nethet/new/nethet.Rcheck/00install.out’ for details.
checking R code for possible problems ... NOTE screen_shrink: no visible global function definition for ‘performance.pcor’ Undefined global functions or variables: performance.pcor

netmap

Version: 0.1.1
GitHub: https://github.com/artod83/netmap
Source code: https://github.com/cran/netmap
Date/Publication: 2022-03-18 16:00:02 UTC
Number of recursive dependencies: 81

Run revdep_details(, "netmap") for more info

checking package dependencies ... ERROR ``` Package required but not available: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

netmediate

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/netmediate
Date/Publication: 2022-08-31 07:50:02 UTC
Number of recursive dependencies: 99

Run revdep_details(, "netmediate") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘mediation’

networksis

Version: 2.1-3
GitHub: NA
Source code: https://github.com/cran/networksis
Date/Publication: 2015-04-16 08:44:42
Number of recursive dependencies: 15

Run revdep_details(, "networksis") for more info

checking R code for possible problems ... NOTE simulate.sisnetwork: no visible global function definition for ‘var’ Undefined global functions or variables: var Consider adding importFrom("stats", "var") to your NAMESPACE file.

PDN

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/PDN
Date/Publication: 2017-11-03 23:27:43 UTC
Number of recursive dependencies: 60

Run revdep_details(, "PDN") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘glmnet’ All declared Imports should be used.

PhosR

Version: 1.6.0
GitHub: NA
Source code: https://github.com/cran/PhosR
Date/Publication: 2022-04-26
Number of recursive dependencies: 182

Run revdep_details(, "PhosR") for more info

checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
checking installed package size ... NOTE installed size is 6.4Mb sub-directories of 1Mb or more: data 3.3Mb doc 2.2Mb
checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘BiocGenerics:::replaceSlots’ ‘S4Vectors:::disableValidity’ ‘SummarizedExperiment:::.SummarizedExperiment.charbound’ See the note in ?`:::` about the use of this operator.

predictionet

Version: 1.40.0
GitHub: NA
Source code: https://github.com/cran/predictionet
Date/Publication: 2021-10-26
Number of recursive dependencies: 36

Run revdep_details(, "predictionet") for more info

checking whether package ‘predictionet’ can be installed ... WARNING Found the following significant warnings: Warning: Package 'predictionet' is deprecated and will be removed from See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/predictionet/new/predictionet.Rcheck/00install.out’ for details.
checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘catnet’ ‘igraph’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached.
checking R code for possible problems ... NOTE .build.regression.regrnet: no visible global function definition for ‘formula’ .build.regression.regrnet: no visible global function definition for ‘lm’ .build2.mim: no visible global function definition for ‘cor’ .exportGML: no visible global function definition for ‘vcount’ .exportGML: no visible global function definition for ‘ecount’ .get.ii4triplets.gaussian: no visible global function definition for ‘cor’ .pred.onegene.bayesnet.fs : <anonymous>: no visible global function ... Undefined global functions or variables: as cnMatParents coefficients complete.cases cor ecount formula lm quantile sessionInfo vcount Consider adding importFrom("methods", "as") importFrom("stats", "coefficients", "complete.cases", "cor", "formula", "lm", "quantile") importFrom("utils", "sessionInfo") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').
checking compiled code ... NOTE ``` File ‘predictionet/libs/predictionet.so’: Found ‘rand’, possibly from ‘rand’ (C) Object: ‘mrnet_ensemble_standalone.o’ Found ‘srand’, possibly from ‘srand’ (C) Object: ‘mrnet_ensemble_standalone.o’

Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. ```

PubScore

Version: 1.8.0
GitHub: NA
Source code: https://github.com/cran/PubScore
Date/Publication: 2022-04-26
Number of recursive dependencies: 132

Run revdep_details(, "PubScore") for more info

checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘PubScore_vignette.Rmd’ using rmarkdown Quitting from lines 144-153 (PubScore_vignette.Rmd) Error: processing vignette 'PubScore_vignette.Rmd' failed with diagnostics: Gateway Timeout (HTTP 504). --- failed re-building ‘PubScore_vignette.Rmd’

SUMMARY: processing the following file failed: ‘PubScore_vignette.Rmd’

Error: Vignette re-building failed. Execution halted ```

checking whether package ‘PubScore’ can be installed ... WARNING Found the following significant warnings: Warning: Package 'PubScore' is deprecated and will be removed from Bioconductor See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/PubScore/new/PubScore.Rcheck/00install.out’ for details.
checking installed package size ... NOTE installed size is 9.4Mb sub-directories of 1Mb or more: data 4.2Mb doc 4.9Mb
checking R code for possible problems ... NOTE get_literature_score: no visible binding for global variable ‘gene2pubmed_db’ get_literature_score: no visible binding for global variable ‘hgcn_entrez_reference’ get_sum_of_weights: no visible binding for global variable ‘Genes’ get_sum_of_weights: no visible binding for global variable ‘Topic’ plot_literature_score: no visible binding for global variable ‘Genes’ plot_literature_score: no visible binding for global variable ‘Topic’ plot_literature_score: no visible binding for global variable ‘number_of_articles’ show,PubScore: no visible binding for global variable ‘pub’ Undefined global functions or variables: Genes Topic gene2pubmed_db hgcn_entrez_reference number_of_articles pub

RSiena

Version: 1.3.0.1
GitHub: NA
Source code: https://github.com/cran/RSiena
Date/Publication: 2021-11-15 17:13:35 UTC
Number of recursive dependencies: 19

Run revdep_details(, "RSiena") for more info

checking installed package size ... NOTE installed size is 19.1Mb sub-directories of 1Mb or more: R 1.0Mb libs 17.2Mb

sand

Version: 2.0.0
GitHub: https://github.com/kolaczyk/sand
Source code: https://github.com/cran/sand
Date/Publication: 2020-07-02 07:20:06 UTC
Number of recursive dependencies: 160

Run revdep_details(, "sand") for more info

checking data for non-ASCII characters ... NOTE Note: found 6 marked UTF-8 strings

SBICgraph

Version: 1.0.0
GitHub: NA
Source code: https://github.com/cran/SBICgraph
Date/Publication: 2021-03-02 19:10:09 UTC
Number of recursive dependencies: 47

Run revdep_details(, "SBICgraph") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘network’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

sparsebnUtils

Version: 0.0.8
GitHub: https://github.com/itsrainingdata/sparsebnUtils
Source code: https://github.com/cran/sparsebnUtils
Date/Publication: 2021-01-27 06:30:02 UTC
Number of recursive dependencies: 64

Run revdep_details(, "sparsebnUtils") for more info

checking Rd cross-references ... NOTE Unknown package ‘sparsebn’ in Rd xrefs

statnetWeb

Version: 0.5.6
GitHub: NA
Source code: https://github.com/cran/statnetWeb
Date/Publication: 2020-08-05 18:00:03 UTC
Number of recursive dependencies: 65

Run revdep_details(, "statnetWeb") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

vivid

Version: 0.2.3
GitHub: NA
Source code: https://github.com/cran/vivid
Date/Publication: 2021-11-20 01:30:02 UTC
Number of recursive dependencies: 201

Run revdep_details(, "vivid") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘zenplots’
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RColorBrewer’ ‘colorspace’ ‘tidyr’ All declared Imports should be used.

wildlifeDI

Version: 0.4.1
GitHub: https://github.com/jedalong/wildlifeDI
Source code: https://github.com/cran/wildlifeDI
Date/Publication: 2021-06-16 15:20:02 UTC
Number of recursive dependencies: 90

Run revdep_details(, "wildlifeDI") for more info

checking package dependencies ... ERROR ``` Package required but not available: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

WOTPLY

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/WOTPLY
Date/Publication: 2022-09-12 07:43:01 UTC
Number of recursive dependencies: 70

Run revdep_details(, "WOTPLY") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘sna’ All declared Imports should be used.

xergm.common

Version: 1.7.8
GitHub: https://github.com/leifeld/xergm.common
Source code: https://github.com/cran/xergm.common
Date/Publication: 2020-04-07 09:50:02 UTC
Number of recursive dependencies: 35

Run revdep_details(, "xergm.common") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘RSiena’

statnet/network documentation built on April 6, 2024, 8:51 p.m.

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Note that we can't provide technical support on individual packages. You should contact the package authors for that.

statnet/network Classes for Relational Data

revdep/problems.md In statnet/network: Classes for Relational Data

BasketballAnalyzeR

In both

BGGM

In both

bingat

In both

Blaunet

In both

bootcluster

In both

broom

In both

CEMiTool

In both

CeTF

Newly fixed

In both

chorrrds

In both

CINNA

In both

CluMSID

In both

conserveR

In both

edgebundle

In both

ergm

In both

ergMargins

In both

ergmito

In both

fcoex

In both

Name: mod_ora

Title: Over Representation Analysis (ORA)

Aliases: mod_ora mod_ora,fcoex-method

** Examples

fssemR

In both

geomnet

In both

Name: football

Title: College football games network (undirected)

Aliases: football

Keywords: datasets

** Examples

GGally

In both

GGMncv

In both

GGMnonreg

In both

ggnetwork

In both

GGPA

In both

ggraph

In both

GOxploreR

In both

GRENITS

In both

gwdegree

In both

ICON

In both

InflectSSP

In both

latentnet

In both

leiden

Newly broken

Newly fixed

In both

lolog

In both

statnet/network
Classes for Relational Data

revdep/problems.md
In statnet/network: Classes for Relational Data