stefanedwards/Siccuracy: Pipeline Package for AlphaImpute
Version 0.8.0

Resources for manipulating genotype files in AlphaImpute format, calculating imputation accuracies (both correlations and correctly imputed) across both samples and SNPs, and calculating heterozygosities. Also features converting PLINK files, reading SHAPEIT and Oxford formatted files, and calculating imputation accuracies on these.

Getting started

Package details

Maintainer
LicenseGPL-2 | GPL-3
Version0.8.0
URL https://github.com/stefanedwards/Siccuracy
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("stefanedwards/Siccuracy")
stefanedwards/Siccuracy documentation built on Dec. 14, 2017, 7:41 p.m.