Files in stefanedwards/Siccuracy
Pipeline Package for AlphaImpute
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Siccuracy.R
R/auxil.R
R/converters.R
R/deprecated.R
R/extract_.R
R/heterozygosity.R
R/imputation_accuracy.R
R/internals.R
R/mutate_chips.R
R/oxford.R
R/shapeit_utils.R
R/vcf_utils.R
README.md
TODO.Rmd
TODO.html
inst/extdata/testdata/simple1.bed
inst/extdata/testdata/simple1.bim
inst/extdata/testdata/simple1.fam
inst/extdata/testdata/simple1.raw
inst/extdata/testdata/simple2.bed
inst/extdata/testdata/simple2.bim
inst/extdata/testdata/simple2.fam
inst/extdata/testdata/simple2.raw
inst/extdata/testdata/simple2_30.raw
inst/extdata/testdata/simulated.haps
inst/extdata/testdata/simulated.sample
inst/extdata/testdata/vcfR.newids.txt
inst/extdata/testdata/vcfR.txt
man/Siccuracy.Rd
man/VCF-format.Rd
man/auxfunc.Rd
man/cbind_snp_files.Rd
man/convert_phases.Rd
man/convert_plink.Rd
man/convert_plinkA.Rd
man/deprecated.Rd
man/extract.gt.Rd
man/extract.snps.Rd
man/haps-format.Rd
man/heterozygosity.Rd
man/imputation_accuracy.Rd
man/mask_snp_file.Rd
man/oxford.Rd
man/parseformat.Rd
man/rbind_snp_files.Rd
man/read.snps.Rd
man/write.snps.Rd
src/auxil.f95
src/converters.f95
src/hetero.f95
src/impacc.f95
src/init.c
src/mutate_chips.f95
src/plink.f95
tests/testthat.R
tests/testthat/test_auxil.R
tests/testthat/test_cbind.R
tests/testthat/test_convert_phases.R
tests/testthat/test_convert_plinkA.R
tests/testthat/test_hetero.R
tests/testthat/test_imp_acc.R
tests/testthat/test_maskSNPs.R
tests/testthat/test_oxford.R
tests/testthat/test_plink.R
tests/testthat/test_rbind.R
tests/testthat/test_shapeit.R
tests/testthat/test_vcf.R
tools/compile_eddie.sh
tools/make_haps_test_data.R
tools/make_plink_test_files.R
tools/make_vcf_test_files.R
tools/test_nlines_time.R
tools/test_plink_converter.R
