Files in stefanedwards/Siccuracy
Pipeline Package for AlphaImpute

.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Siccuracy.R R/auxil.R R/converters.R R/deprecated.R R/extract_.R R/heterozygosity.R R/imputation_accuracy.R R/internals.R R/mutate_chips.R R/oxford.R R/shapeit_utils.R R/vcf_utils.R README.md TODO.Rmd
TODO.html
inst/extdata/testdata/simple1.bed
inst/extdata/testdata/simple1.bim
inst/extdata/testdata/simple1.fam
inst/extdata/testdata/simple1.raw
inst/extdata/testdata/simple2.bed
inst/extdata/testdata/simple2.bim
inst/extdata/testdata/simple2.fam
inst/extdata/testdata/simple2.raw
inst/extdata/testdata/simple2_30.raw
inst/extdata/testdata/simulated.haps
inst/extdata/testdata/simulated.sample
inst/extdata/testdata/vcfR.newids.txt
inst/extdata/testdata/vcfR.txt
man/Siccuracy.Rd man/VCF-format.Rd man/auxfunc.Rd man/cbind_snp_files.Rd man/convert_phases.Rd man/convert_plink.Rd man/convert_plinkA.Rd man/deprecated.Rd man/extract.gt.Rd man/extract.snps.Rd man/haps-format.Rd man/heterozygosity.Rd man/imputation_accuracy.Rd man/mask_snp_file.Rd man/oxford.Rd man/parseformat.Rd man/rbind_snp_files.Rd man/read.snps.Rd man/write.snps.Rd
src/auxil.f95
src/converters.f95
src/hetero.f95
src/impacc.f95
src/init.c
src/mutate_chips.f95
src/plink.f95
tests/testthat.R tests/testthat/test_auxil.R tests/testthat/test_cbind.R tests/testthat/test_convert_phases.R tests/testthat/test_convert_plinkA.R tests/testthat/test_hetero.R tests/testthat/test_imp_acc.R tests/testthat/test_maskSNPs.R tests/testthat/test_oxford.R tests/testthat/test_plink.R tests/testthat/test_rbind.R tests/testthat/test_shapeit.R tests/testthat/test_vcf.R
tools/compile_eddie.sh
tools/make_haps_test_data.R tools/make_plink_test_files.R tools/make_vcf_test_files.R tools/test_nlines_time.R tools/test_plink_converter.R
stefanedwards/Siccuracy documentation built on Dec. 14, 2017, 7:41 p.m.