tools/test_plink_converter.R
In stefanedwards/Siccuracy: Pipeline Package for AlphaImpute
library(Siccuracy)
outfn <- "C:/Users/shojedw/Documents/Projects/Siccuracy.extra/stuff/cache_canine_imputation/cornell_canine.txt"
inp <- "C:/Users/shojedw/Documents/Projects/Siccuracy.extra/stuff/cache_canine_imputation/cornell_canine"
chrfn <- function(i) sprintf('C:/Users/shojedw/Documents/Projects/Siccuracy.extra/stuff/cache_canine_imputation/cornell_canine_chr%02i.txt', i)
res <- convert_plink(inp, outfn, method='lowmem', fragmentfns = chrfn, remerge=FALSE)
print(res$fragmentfns)
stefanedwards/Siccuracy documentation built on May 30, 2019, 10:44 a.m.
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library(Siccuracy)
outfn <- "C:/Users/shojedw/Documents/Projects/Siccuracy.extra/stuff/cache_canine_imputation/cornell_canine.txt"
inp <- "C:/Users/shojedw/Documents/Projects/Siccuracy.extra/stuff/cache_canine_imputation/cornell_canine"
chrfn <- function(i) sprintf('C:/Users/shojedw/Documents/Projects/Siccuracy.extra/stuff/cache_canine_imputation/cornell_canine_chr%02i.txt', i)
res <- convert_plink(inp, outfn, method='lowmem', fragmentfns = chrfn, remerge=FALSE)
print(res$fragmentfns)
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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