API for stefanedwards/Siccuracy
Pipeline Package for AlphaImpute
| Global functions | |
|---|---|
| AlphaImpute-format | Man page |
| Auxiliary functions | Man page |
| Oxford format | Man page |
| SHAPEIT format | Man page |
| Siccuracy | Man page |
| Siccuracy-deprecated | Man page |
| Siccuracy-package | Man page |
| VCF format | Man page |
| as.haps | Man page |
| cbind_SNP_files | Man page |
| cbind_SNPs | Man page |
| cbind_snp_files | Man page |
| convert_phases | Man page |
| convert_plink | Man page |
| convert_plinkA | Man page |
| extract.gt | Man page |
| extract.gt.haps | Man page |
| extract.gt.oxford | Man page |
| extract.gt.vcfR | Man page |
| extract.snps | Man page |
| extract.snps.haps | Man page |
| extract.snps.oxford | Man page |
| extract.snps.vcfR | Man page |
| get_firstcolumn | Man page |
| get_ncols | Man page |
| get_nlines | Man page |
| heterozygosity | Man page |
| imputation_accuracy | Man page |
| imputation_accuracy.character | Man page |
| imputation_accuracy.haps | Man page |
| imputation_accuracy.matrix | Man page |
| imputation_accuracy.vcfR | Man page |
| imputation_accuracy1 | Man page |
| imputation_accuracy3 | Man page |
| is.haps | Man page |
| is.oxford | Man page |
| mask_SNPs | Man page |
| mask_snp_file | Man page |
| mergeChips | Man page |
| parseformat | Man page |
| phasotogeno | Man page |
| phasotogeno_int | Man page |
| rbind_SNP_files | Man page |
| rbind_SNPs | Man page |
| rbind_snp_files | Man page |
| read.haps | Man page |
| read.oxford | Man page |
| read.snps | Man page |
| rowconcatenate | Man page |
| write.haps | Man page |
| write.oxford | Man page |
| write.snps | Man page |
| write.snps.haps | Man page |
| write.snps.matrix | Man page |
| write.snps.oxford | Man page |
| write.snps.vcfR | Man page |
