join_features: join_features

In stemangiola/tidyseurat: Brings Seurat to the Tidyverse

join_features

Description

join_features() extracts and joins information for specific features

Usage

## S4 method for signature 'Seurat'
join_features(
  .data,
  features = NULL,
  all = FALSE,
  exclude_zeros = FALSE,
  shape = "long",
  assay = NULL,
  slot = "data",
  ...
)

Arguments

.data	A tidyseurat object
features	A vector of feature identifiers to join
all	If TRUE return all
exclude_zeros	If TRUE exclude zero values
shape	Format of the returned table "long" or "wide"
assay	assay name to extract feature abundance
slot	slot name to extract feature abundance
...	Parameters to pass to join wide, i.e. assay name to extract feature abundance from and gene prefix, for shape="wide"

Details

This function extracts information for specified features and returns the information in either long or wide format.

Value

A 'tidyseurat' object containing information for the specified features.

Examples

data(pbmc_small)
pbmc_small %>% join_features(
  features=c("HLA-DRA", "LYZ"))

stemangiola/tidyseurat documentation built on March 8, 2024, 1:18 a.m.