API for stemangiola/ttSc
Friendly tidy wrappers for facilitating transcriptional analyses
| Global functions | |
|---|---|
| BottomUpMerge | Source code |
| ComputeMarkers | Source code |
| DecisionTree | Source code |
| ExpectedLogW | Source code |
| GapStatistic | Source code |
| IKAP | Source code |
| NearestCluster | Source code |
| ObservedLogW | Source code |
| PlotSummary | Source code |
| SelectCandidate | Source code |
| add_adjusted_counts_for_unwanted_variation_sc | Man page |
| add_assay | Man page |
| add_attr | Man page |
| add_cell_cycle_annotation_sc | Man page |
| add_cell_type_annotation_sc | Man page |
| add_class | Man page |
| add_cluster_annotation_SNN_sc | Man page |
| add_doublet_classification_sc | Man page |
| add_mitochndrion_transcription_abundance_sc | Man page |
| add_normalised_counts_sc | Man page |
| add_reduced_dimensions_PCA | Man page |
| add_reduced_dimensions_TSNE | Man page |
| add_reduced_dimensions_UMAP | Man page |
| add_rotated_dimensions_sc | Man page |
| add_variable_genes_classification | Man page |
| adjust_abundance | Man page |
| aggregate_cells | Man page |
| aggregate_cells,Seurat-method | Man page |
| aggregate_cells,SingleCellExperiment-method | Man page |
| aggregate_duplicated_transcripts_sc | Man page Source code |
| aggregate_duplicated_transcripts_wide_sc | Man page |
| aggregate_duplicates | Man page |
| annotate_symbol | Man page |
| as_matrix | Man page Source code |
| cluster_elements | Man page |
| create_seurat_from_tibble | Man page |
| create_seurat_from_tibble_wide | Man page |
| create_tt_from_cellRanger_sc | Man page |
| create_tt_from_seurat | Man page |
| create_tt_from_tibble_sc | Man page |
| create_tt_from_tibble_wide_sc | Man page |
| deconvolve_cellularity | Man page |
| do_integration_seurat | Man page |
| drop_assay | Man page |
| drop_attr | Man page |
| drop_class | Man page |
| error_if_counts_is_na | Man page Source code |
| error_if_duplicated_genes | Man page Source code |
| error_if_log_transformed | Man page Source code |
| error_if_wrong_input | Man page Source code |
| extract_abundance | Man page |
| get_abundance_sc_long | Man page |
| get_abundance_sc_wide | Man page |
| get_adjusted_counts_for_unwanted_variation_sc | Man page |
| get_cell | Man page |
| get_cell_cycle_annotation_sc | Man page |
| get_cell_type_annotation_sc | Man page |
| get_cluster_annotation_SNN_automatic | Man page |
| get_cluster_annotation_SNN_sc | Man page |
| get_mitochndrion_transcription_abundance_sc | Man page |
| get_normalised_counts_sc | Man page |
| get_reduced_dimensions_PCA | Man page |
| get_reduced_dimensions_TSNE | Man page |
| get_reduced_dimensions_UMAP | Man page |
| get_rotated_dimensions_sc | Man page |
| get_specific_annotation_columns | Source code |
| hello | Man page |
| ifelse2_pipe | Man page Source code |
| ifelse3_pipe | Man page Source code |
| ifelse_pipe | Man page Source code |
| iterate_cell_cycle_scoreing | Man page |
| merged_tt_object | Man page |
| parse_formula | Man page Source code |
| prepend | Man page |
| quo_names | Source code |
| reduce_dimensions | Man page |
| remove_redundancy | Man page |
| rename_sample_if_samples_not_set_by_user | Man page |
| rotate_dimensions | Man page |
| scale_abundance | Man page |
| scale_design | Man page Source code |
| select_closest_pairs | Man page |
| set_default_assay_seurat | Man page |
| subset | Source code |
| test_differential_abundance | Man page |
| tidysc | Man page |
| tidysc_cell_ranger | Man page Source code |
| tidysc_cell_ranger.default | Man page Source code |
| tidysc_long | Man page Source code |
| tidysc_long.default | Source code |
| tidysc_long.tbl_df | Source code |
| tidysc_wide | Man page Source code |
| tidysc_wide.default | Source code |
| tidysc_wide.tbl_df | Source code |
| update_object_sc | Man page |
