annotate_symbol: Add transcript symbol column from ensembl id

In stemangiola/ttSc: Friendly tidy wrappers for facilitating transcriptional analyses

Add transcript symbol column from ensembl id

Description

annotate_symbol() takes as imput a 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | and returns a 'tbl' with the the additional transcript symbol column

Usage

annotate_symbol(.data, .ensembl, action = "add")

Arguments

.data	A 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> |
.ensembl	A character string. The column that is represents ensembl gene id
action	A character string. Whether to join the new information to the input tbl (add), or just get the non-redundant tbl with the new information (get).

Details

\lifecycle

experimental

This is useful since different resources use ensembl IDs while others use gene symbol IDs.

Value

A 'tbl' object including additional columns for transcript symbol

Examples

	counts_ensembl %>% annotate_symbol(ens)

stemangiola/ttSc documentation built on Dec. 8, 2022, 2:37 a.m.