create_tt_from_tibble_wide_sc: Create tt object from tibble

In stemangiola/ttSc: Friendly tidy wrappers for facilitating transcriptional analyses

Create tt object from tibble

Description

Create tt object from tibble

Usage

create_tt_from_tibble_wide_sc(
  .data,
  .sample,
  .transcript_position,
  .cell,
  species,
  min.transcripts = 400,
  min.cells = 5,
  high.mito.thresh = 0.08,
  high.umi.thresh = 10000,
  genome = switch(tolower(species), human = "hg38", mouse = "mm10",
    stop("tidysc says: species not present")),
  ...
)

Arguments

.data	A tibble
.sample	A character name of the sample column
.cell	A character name of the cell name column
species	A character name of the species used (e.g., Mouse, Human)
.transcript	A character name of the transcript name column
.abundance	A character name of the count column

Value

A tibble with an additional column

stemangiola/ttSc documentation built on Dec. 8, 2022, 2:37 a.m.