Man pages for stephenbates19/digitaltwins
Causal inference for SNPs
| accum_test | Accumulation test with the hinge-exponential function |
| col_cors | Correlation across columns |
| conditional_tdt | The DTT with a TDT-like test statistic |
| create_offspring_population | Simulate an offspring population |
| deviance_test_stats | Computed test statistics based on deviance change for GLM |
| find_mate_pair | Find a pair of haplotypes. |
| forward_backward_ | forward_backward_ |
| generate_ancestry | Generate ancestry information |
| generate_offspring | Generate a synthetic offspring |
| gen_id_to_haps | Convert genotype IDs to haplotype IDs |
| get_beta_glmnet | Run CV glmnet |
| get_fb_results | Forward-backward algorithm for parent-offspring trio of... |
| get_genotype_ids | Complete haplotype list |
| get_phased_ancestry | Indentify maternal vs paternal haplotypes |
| haps_id_to_gen | Convert haplotype IDs to genptype IDs |
| haps_matrix | 3,000 synthetic haplotypes from one chromosome |
| haps_to_gen | Convert haplotype matrix to genotype matrix |
| hinge_exp | Hinge-exponential function |
| impute_variant_fast | Imputes a set of variants |
| linear_crt | DTT using a fixed linear statistic |
| linear_crt_indep | DTT with independence, using a fixed linear statistic |
| logistic_ll | Logistic-log likelihood |
| sample_ancestry_ | sample_ancestry_ |
| sample_parity_poisson | Sample poisson conditional on its parity |
| tdt | Computes TDT p-value |
