create_offspring_population: Simulate an offspring population

In stephenbates19/digitaltwins: Causal inference for SNPs

Description

Samples a population of offspring haplotypes with optional preferred mating.

Usage

create_offspring_population(parent_pop, d, n_offspring = 100,
  lambda = 0.012, scores = NULL, beta = 0)

Arguments

parent_pop	n x p matrix of parental haplotypes
d	genetic distance
n_offspring	number of offspring to sample.
lambda	recombination rate (recombinations per unit genetic distance)
scores	n-vector of scores for preferred mating (e.g. inner product with first PC)
beta	intensity of preferred mating.

Value

ancestry: n_offspring x 2 matrix giving parents for each sampled offspring

children: n_offspring x p matrix giving the offspring haplotypes.

stephenbates19/digitaltwins documentation built on Feb. 25, 2020, 12:41 a.m.