API for stephenslab/flashr
Empirical Bayes Matrix Factorization
| Global functions | |
|---|---|
| NM_posterior_e_loglik | Source code |
| add_ebnm_ash_defaults | Source code |
| add_ebnm_fn_defaults | Source code |
| add_ebnm_pn_defaults | Source code |
| add_factors_from_data | Source code |
| add_l_sampler_params | Source code |
| calc_diff | Source code |
| calc_ebnm_f_args | Source code |
| calc_ebnm_l_args | Source code |
| calc_max_chg | Source code |
| calc_obj_diff | Source code |
| calc_update_vals | Source code |
| compute_precision | Source code |
| compute_summary_statistics | Source code |
| construct_flash_object | Source code |
| e_loglik | Source code |
| e_loglik_from_R2_and_tau | Source code |
| ebnm_ash | Source code |
| ebnm_pl | Source code |
| ebnm_pn | Source code |
| find_col_blocks | Source code |
| flash | Man page Source code |
| flash_add_factors_from_data | Man page Source code |
| flash_add_fixed_factors | Man page Source code |
| flash_add_fixed_loadings | Man page Source code |
| flash_add_greedy | Man page Source code |
| flash_add_lf | Source code |
| flash_backfit | Man page Source code |
| flash_backfit_workhorse | Source code |
| flash_combine | Source code |
| flash_f_sampler | Source code |
| flash_fill | Man page Source code |
| flash_get_R | Source code |
| flash_get_R2 | Source code |
| flash_get_R2k | Source code |
| flash_get_R_withmissing | Source code |
| flash_get_Rk | Source code |
| flash_get_f | Source code |
| flash_get_fitted_values | Man page Source code |
| flash_get_k | Source code |
| flash_get_l | Source code |
| flash_get_ldf | Man page Source code |
| flash_get_n | Source code |
| flash_get_nfactors | Man page Source code |
| flash_get_objective | Source code |
| flash_get_p | Source code |
| flash_get_pve | Man page Source code |
| flash_greedy_workhorse | Source code |
| flash_init_fn | Source code |
| flash_init_lf | Source code |
| flash_init_null | Source code |
| flash_init_udv | Source code |
| flash_l_sampler | Source code |
| flash_lf_sampler | Source code |
| flash_lf_sampler_fixedf | Source code |
| flash_lf_sampler_fixedl | Source code |
| flash_optimize_single_fl | Source code |
| flash_r1 | Source code |
| flash_sampler | Man page Source code |
| flash_set_data | Man page Source code |
| flash_single_l_sampler | Source code |
| flash_subset_data | Source code |
| flash_subset_f | Source code |
| flash_subset_l | Source code |
| flash_transpose | Source code |
| flash_transpose_data | Source code |
| flash_update_precision | Source code |
| flash_update_single_factor | Source code |
| flash_update_single_fl | Source code |
| flash_update_single_loading | Source code |
| flash_zero_out_factor | Man page Source code |
| get_Yorig | Source code |
| get_flash_fit | Source code |
| get_flash_fit_history | Source code |
| handle_LL | Source code |
| handle_data | Source code |
| handle_ebnm_fn | Source code |
| handle_ebnm_param | Source code |
| handle_f | Source code |
| handle_fix | Source code |
| handle_init_fn | Source code |
| handle_k | Source code |
| handle_kset | Source code |
| handle_var_type | Source code |
| is_max_chg_needed | Source code |
| is_obj_needed | Source code |
| is_tiny_fl | Source code |
| mle_precision_constant | Source code |
| normalize_lf | Source code |
| perform_nullcheck | Source code |
| plot.flash | Man page Source code |
| plot_kset | Source code |
| plot_pve | Source code |
| print.flash | Man page Source code |
| sampler | Source code |
| stopping_criterion_string | Source code |
| udv_si | Source code |
| udv_si_svd | Source code |
| verbose_backfit_announce | Source code |
| verbose_greedy_next_fl | Source code |
| verbose_nullcheck_announce | Source code |
| verbose_nullcheck_complete | Source code |
| verbose_nullcheck_delete_fl | Source code |
| verbose_nullcheck_keep_fl | Source code |
| verbose_obj_decrease_warning | Source code |
| verbose_obj_table_entry | Source code |
| verbose_obj_table_header | Source code |
| verbose_sparsity | Source code |
| zero_out_factor | Source code |
