API for stephenslab/mashr
Multivariate Adaptive Shrinkage
| Global functions | |
|---|---|
| .fixfix | Source code |
| E_V | Source code |
| autoselect_grid | Source code |
| bovy_wrapper | Man page Source code |
| calc_lik_matrix | Man page |
| calc_lik_matrix_common_cov | Man page Source code |
| calc_lik_precomputed_rcpp | Source code |
| calc_lik_rcpp | Source code |
| calc_lik_vector | Man page Source code |
| calc_post_rcpp | Source code |
| calc_relative_lik_matrix | Man page |
| calc_sermix_rcpp | Source code |
| check_covmat_basics | Source code |
| check_dim | Source code |
| check_positive_definite | Source code |
| compute_alt_loglik_from_matrix_and_pi | Man page Source code |
| compute_loglik_from_matrix_and_pi | Man page Source code |
| compute_null_loglik_from_matrix | Man page Source code |
| compute_posterior_matrices | Man page |
| compute_posterior_matrices_common_cov_R | Man page Source code |
| compute_posterior_matrices_general_R | Man page Source code |
| compute_posterior_weights | Man page Source code |
| compute_vloglik_from_matrix_and_pi | Man page Source code |
| contrast_matrix | Man page Source code |
| cov_all_zeros | Man page Source code |
| cov_canonical | Man page Source code |
| cov_ed | Man page Source code |
| cov_equal_effects | Man page Source code |
| cov_first_singleton | Man page Source code |
| cov_flash | Man page |
| cov_from_factors | Man page Source code |
| cov_identity | Source code |
| cov_methods | Source code |
| cov_pca | Man page Source code |
| cov_simple_het | Man page Source code |
| cov_singletons | Source code |
| cov_udi | Man page Source code |
| cov_udi_single | Man page Source code |
| estimate_null_correlation_simple | Man page Source code |
| expand_cov | Man page Source code |
| extreme_deconvolution | Man page Source code |
| extreme_deconvolution_rcpp | Source code |
| fit_mash_V | Source code |
| fit_teem_rcpp | Source code |
| get_cov | Source code |
| get_estimated_pi | Man page Source code |
| get_estimated_pi_no_collapse | Source code |
| get_log10bf | Man page Source code |
| get_n_significant_conditions | Man page Source code |
| get_ncond | Source code |
| get_pairwise_sharing | Man page Source code |
| get_pairwise_sharing_from_samples | Man page Source code |
| get_posterior_condition_wise_summary | Man page |
| get_samples | Man page Source code |
| get_significant_results | Man page Source code |
| grid_max | Source code |
| grid_min | Source code |
| initialize_pi | Source code |
| inv_chol_tri_rcpp | Source code |
| is_common_cov_Shat | Source code |
| is_common_cov_Shat_alpha | Source code |
| labelled_stop | Source code |
| make_names | Man page Source code |
| mash | Man page Source code |
| mash_1by1 | Man page Source code |
| mash_compute_loglik | Man page Source code |
| mash_compute_posterior_matrices | Man page Source code |
| mash_compute_vloglik | Man page Source code |
| mash_estimate_corr_em | Man page Source code |
| mash_plot_meta | Man page Source code |
| mash_set_data | Man page |
| mash_set_data_contrast | Man page Source code |
| mash_update_data | Man page Source code |
| multiply_list | Source code |
| n_conditions | Source code |
| n_effects | Source code |
| names_cov_udi | Source code |
| normalize_Ulist | Source code |
| normalize_cov | Source code |
| optimize_pi | Man page Source code |
| p2z | Source code |
| posterior_cov | Man page Source code |
| posterior_mean | Man page Source code |
| posterior_mean_matrix | Man page Source code |
| r1cov | Source code |
| scale_cov | Man page Source code |
| set_prior | Source code |
| sim_contrast1 | Man page Source code |
| sim_contrast2 | Man page Source code |
| simple_sims | Man page Source code |
| simple_sims2 | Man page Source code |
| teem_wrapper | Man page Source code |
| udi_model_matrix | Man page Source code |
