API for stephenslab/mashr
Multivariate Adaptive Shrinkage

Global functions
autoselect_grid Source code
calc_lik_matrix Man page Source code
calc_lik_matrix_common_cov Man page Source code
calc_lik_rcpp Source code
calc_lik_vector Man page Source code
calc_post_rcpp Source code
calc_relative_lik_matrix Man page Source code
check_dim Source code
compute_alt_loglik_from_matrix_and_pi Man page Source code
compute_loglik_from_matrix_and_pi Man page Source code
compute_null_correlation_lower_bound Man page Source code
compute_null_loglik_from_matrix Man page Source code
compute_posterior_matrices Man page Source code
compute_posterior_matrices_common_cov_R Man page Source code
compute_posterior_matrices_general_R Man page Source code
compute_posterior_weights Man page Source code
compute_vloglik_from_matrix_and_pi Man page Source code
cov_all_zeros Man page Source code
cov_canonical Man page Source code
cov_ed Man page Source code
cov_equal_effects Man page Source code
cov_first_singleton Man page Source code
cov_from_factors Man page Source code
cov_identity Source code
cov_methods Source code
cov_pca Man page Source code
cov_simple_het Man page Source code
cov_singletons Source code
cov_udi Man page Source code
cov_udi_single Man page Source code
ed_wrapper Man page Source code
estimate_null_correlation Man page Source code
expand_cov Man page Source code
get_cov Source code
get_estimated_pi Man page Source code
get_estimated_pi_no_collapse Source code
get_log10bf Man page Source code
get_n_significant_conditions Man page Source code
get_ncond Source code
get_pairwise_sharing Man page Source code
get_significant_results Man page Source code
grid_max Source code
grid_min Source code
initialize_pi Man page Source code
is_common_cov_Shat Man page Source code
is_common_cov_Shat_alpha Man page Source code
make_names Man page Source code
mash Man page Source code
mash_1by1 Man page Source code
mash_compute_loglik Man page Source code
mash_compute_posterior_matrices Man page Source code
mash_compute_vloglik Man page Source code
mash_plot_meta Man page Source code
mash_set_data Man page Source code
mash_set_data_contrast Man page Source code
multiply_list Source code
n_conditions Source code
n_effects Source code
names_cov_udi Source code
normalize_Ulist Source code
normalize_cov Source code
optimize_pi Man page Source code
p2z Source code
posterior_cov Man page Source code
posterior_mean Man page Source code
posterior_mean_matrix Man page Source code
r1cov Source code
scale_cov Man page Source code
set_prior Source code
sim_contrast1 Man page Source code
sim_contrast2 Man page Source code
simple_sims Man page Source code
simple_sims2 Man page Source code
udi_model_matrix Man page Source code
stephenslab/mashr documentation built on July 21, 2018, 2:06 a.m.