Files in stephenslab/mashr
Multivariate Adaptive Shrinkage

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R R/compute_covs.R R/cov_udi.R R/data2cov.R R/ed.R R/est_cor.R R/get_functions.R R/likelihoods_origdata.R R/likelihoods_scaleddata.R R/mash.R R/opt.R R/plots.R R/posterior.R R/posterior_common_cov.R R/posterior_lowmem.R R/set_data.R R/simulations.R R/simulations_contrast.R R/todo.R README.md
_pkgdown.yaml
appveyor.yml
docs/LICENSE.html
docs/articles/eQTL_outline.html
docs/articles/index.html
docs/articles/intro_correlations.html
docs/articles/intro_mash.html
docs/articles/intro_mash_dd.html
docs/articles/intro_mash_files/figure-html/unnamed-chunk-11-1.png
docs/articles/intro_mash_files/figure-html/unnamed-chunk-12-1.png
docs/articles/simulate_noncanon.html
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/calc_lik_matrix.html
docs/reference/calc_lik_matrix_common_cov.html
docs/reference/calc_lik_vector.html
docs/reference/calc_relative_lik_matrix.html
docs/reference/compute_alt_loglik_from_matrix_and_pi.html
docs/reference/compute_loglik_from_matrix_and_pi.html
docs/reference/compute_null_correlation_lower_bound.html
docs/reference/compute_null_loglik_from_matrix.html
docs/reference/compute_posterior_matrices.html
docs/reference/compute_posterior_matrices_common_cov_R.html
docs/reference/compute_posterior_matrices_general_R.html
docs/reference/compute_posterior_weights.html
docs/reference/compute_vloglik_from_matrix_and_pi.html
docs/reference/cov_all_zeros.html
docs/reference/cov_canonical.html
docs/reference/cov_ed.html
docs/reference/cov_equal_effects.html
docs/reference/cov_first_singleton.html
docs/reference/cov_from_factors.html
docs/reference/cov_pca.html
docs/reference/cov_simple_het.html
docs/reference/cov_udi.html
docs/reference/cov_udi_single.html
docs/reference/ed_wrapper.html
docs/reference/estimate_null_correlation.html
docs/reference/expand_cov.html
docs/reference/get_estimated_pi.html
docs/reference/get_log10bf.html
docs/reference/get_n_significant_conditions.html
docs/reference/get_pairwise_sharing.html
docs/reference/get_significant_results.html
docs/reference/index.html
docs/reference/initialize_pi.html
docs/reference/is_common_cov_Shat.html
docs/reference/is_common_cov_Shat_alpha.html
docs/reference/make_names.html
docs/reference/mash.html
docs/reference/mash_1by1.html
docs/reference/mash_compute_loglik.html
docs/reference/mash_compute_posterior_matrices.html
docs/reference/mash_compute_vloglik.html
docs/reference/mash_plot_meta.html
docs/reference/mash_set_data.html
docs/reference/mash_set_data_contrast.html
docs/reference/optimize_pi.html
docs/reference/posterior_cov.html
docs/reference/posterior_mean.html
docs/reference/posterior_mean_matrix.html
docs/reference/scale_cov.html
docs/reference/sim_contrast1.html
docs/reference/sim_contrast2.html
docs/reference/simple_sims.html
docs/reference/simple_sims2.html
docs/reference/udi_model_matrix.html
inst/code/test1.R inst/code/test_lik.R inst/code/test_post.R man/calc_lik_matrix.Rd man/calc_lik_matrix_common_cov.Rd man/calc_lik_vector.Rd man/calc_relative_lik_matrix.Rd man/compute_alt_loglik_from_matrix_and_pi.Rd man/compute_loglik_from_matrix_and_pi.Rd man/compute_null_correlation_lower_bound.Rd man/compute_null_loglik_from_matrix.Rd man/compute_posterior_matrices.Rd man/compute_posterior_matrices_common_cov_R.Rd man/compute_posterior_matrices_general_R.Rd man/compute_posterior_weights.Rd man/compute_vloglik_from_matrix_and_pi.Rd man/cov_all_zeros.Rd man/cov_canonical.Rd man/cov_ed.Rd man/cov_equal_effects.Rd man/cov_first_singleton.Rd man/cov_from_factors.Rd man/cov_pca.Rd man/cov_simple_het.Rd man/cov_udi.Rd man/cov_udi_single.Rd man/ed_wrapper.Rd man/estimate_null_correlation.Rd man/expand_cov.Rd man/get_estimated_pi.Rd man/get_log10bf.Rd man/get_n_significant_conditions.Rd man/get_pairwise_sharing.Rd man/get_significant_results.Rd man/initialize_pi.Rd man/is_common_cov_Shat.Rd man/is_common_cov_Shat_alpha.Rd man/make_names.Rd man/mash.Rd man/mash_1by1.Rd man/mash_compute_loglik.Rd man/mash_compute_posterior_matrices.Rd man/mash_compute_vloglik.Rd man/mash_plot_meta.Rd man/mash_set_data.Rd man/mash_set_data_contrast.Rd man/optimize_pi.Rd man/posterior_cov.Rd man/posterior_mean.Rd man/posterior_mean_matrix.Rd man/scale_cov.Rd man/sim_contrast1.Rd man/sim_contrast2.Rd man/simple_sims.Rd man/simple_sims2.Rd man/udi_model_matrix.Rd
mashr.Rproj
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/mash.cpp
src/mash.h
tests/testthat.R
tests/testthat/calc_lik_matrix_data.RData
tests/testthat/compute_posterior_matrices_data.RData
tests/testthat/test_ash.R tests/testthat/test_cov.R tests/testthat/test_cov_udi.R tests/testthat/test_cpp_computation.R tests/testthat/test_getfunctions.R tests/testthat/test_likelihood.R tests/testthat/test_likelihood_common_cov.R tests/testthat/test_posterior.R tests/testthat/test_posterior_common_cov.R tests/testthat/test_set_data.R tests/testthat/test_simple_sims.R vignettes/eQTL_outline.Rmd vignettes/intro_correlations.Rmd vignettes/intro_mash.Rmd vignettes/intro_mash_dd.Rmd vignettes/simulate_noncanon.Rmd
stephenslab/mashr documentation built on July 21, 2018, 2:06 a.m.