Files in stephenslab/mashr
Multivariate Adaptive Shrinkage

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R R/compute_covs.R R/cov_udi.R R/data2cov.R R/ed.R R/est_cor.R R/get_functions.R R/likelihoods.R R/likelihoods_common_cov.R R/mash.R R/opt.R R/plots.R R/posterior.R R/posterior_common_cov.R R/posterior_lowmem.R R/set_data.R R/simulations.R R/todo.R README.md
appveyor.yml
docs/intro_mash.html
docs/intro_mash_dd.html
docs/simulate_noncanon.html
inst/test1.R inst/test_lik.R inst/test_post.R
inst/travis-before-install.sh
man/calc_lik_matrix.Rd man/calc_lik_matrix_common_cov.Rd man/calc_lik_vector.Rd man/calc_relative_lik_matrix.Rd man/compute_alt_loglik_from_matrix_and_pi.Rd man/compute_loglik_from_matrix_and_pi.Rd man/compute_null_correlation_lower_bound.Rd man/compute_posterior_matrices.Rd man/compute_posterior_matrices_common_cov_R.Rd man/compute_posterior_matrices_general_R.Rd man/compute_posterior_weights.Rd man/compute_vloglik_from_matrix_and_pi.Rd man/cov_all_zeros.Rd man/cov_canonical.Rd man/cov_ed.Rd man/cov_equal_effects.Rd man/cov_first_singleton.Rd man/cov_from_factors.Rd man/cov_pca.Rd man/cov_simple_het.Rd man/cov_udi.Rd man/cov_udi_single.Rd man/ed_wrapper.Rd man/estimate_null_correlation.Rd man/expand_cov.Rd man/get_estimated_pi.Rd man/get_log10bf.Rd man/get_n_significant_conditions.Rd man/get_pairwise_sharing.Rd man/get_significant_results.Rd man/initialize_pi.Rd man/is_common_cov.Rd man/make_names.Rd man/mash.Rd man/mash_1by1.Rd man/mash_compute_loglik.Rd man/mash_compute_posterior_matrices.Rd man/mash_compute_vloglik.Rd man/mash_plot_meta.Rd man/optimize_pi.Rd man/posterior_cov.Rd man/posterior_mean.Rd man/posterior_mean_matrix.Rd man/scale_cov.Rd man/set_mash_data.Rd man/simple_sims.Rd man/simple_sims2.Rd man/udi_model_matrix.Rd
mashr.Rproj
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/mash.cpp
src/mash.h
tests/testthat.R
tests/testthat/calc_lik_matrix_data.RData
tests/testthat/compute_posterior_matrices_data.RData
tests/testthat/test_ash.R tests/testthat/test_cov.R tests/testthat/test_cov_udi.R tests/testthat/test_cpp_computation.R tests/testthat/test_getfunctions.R tests/testthat/test_likelihood.R tests/testthat/test_likelihood_common_cov.R tests/testthat/test_posterior.R tests/testthat/test_posterior_common_cov.R tests/testthat/test_simple_sims.R vignettes/intro_mash.Rmd vignettes/intro_mash_dd.Rmd vignettes/simulate_noncanon.Rmd
stephenslab/mashr documentation built on Oct. 9, 2017, 5:31 a.m.