Files in stephenslab/mashr
Multivariate Adaptive Shrinkage

.Rbuildignore

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.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/RcppExports.R R/compute_covs.R R/cov_udi.R R/data2cov.R R/ed.R R/est_cor.R R/extreme_deconvolution.R R/get_functions.R R/likelihoods_origdata.R R/likelihoods_scaleddata.R R/mash.R R/matrix_utils.R R/opt.R R/plots.R R/posterior.R R/posterior_common_cov.R R/posterior_lowmem.R R/set_data.R R/simulations.R R/simulations_contrast.R R/todo.R README.md

_pkgdown.yaml

cleanup

configure

configure.win

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/MASH_baseline.pdf

docs/articles/eQTL_outline.html

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inst/CITATION

inst/COPYRIGHTS

inst/code/compare_ed_vs_teem.Rmd inst/code/get_est_null_cor.R inst/code/test1.R inst/code/test_lik.R inst/code/test_post.R

inst/misc/LICENSE-extreme-deconvolution

inst/misc/post-commit.sh

inst/misc/pre-commit.sh

inst/misc/uncrustify_default.cfg

man/bovy_wrapper.Rd man/calc_lik_matrix.Rd man/calc_lik_matrix_common_cov.Rd man/calc_lik_vector.Rd man/calc_relative_lik_matrix.Rd man/compute_alt_loglik_from_matrix_and_pi.Rd man/compute_loglik_from_matrix_and_pi.Rd man/compute_null_loglik_from_matrix.Rd man/compute_posterior_matrices.Rd man/compute_posterior_matrices_common_cov_R.Rd man/compute_posterior_matrices_general_R.Rd man/compute_posterior_weights.Rd man/compute_vloglik_from_matrix_and_pi.Rd man/contrast_matrix.Rd man/cov_all_zeros.Rd man/cov_canonical.Rd man/cov_ed.Rd man/cov_equal_effects.Rd man/cov_first_singleton.Rd man/cov_flash.Rd man/cov_from_factors.Rd man/cov_pca.Rd man/cov_simple_het.Rd man/cov_udi.Rd man/cov_udi_single.Rd man/estimate_null_correlation_simple.Rd man/expand_cov.Rd man/extreme_deconvolution.Rd man/get_estimated_pi.Rd man/get_log10bf.Rd man/get_n_significant_conditions.Rd man/get_pairwise_sharing.Rd man/get_pairwise_sharing_from_samples.Rd man/get_samples.Rd man/get_significant_results.Rd man/make_names.Rd man/mash.Rd man/mash_1by1.Rd man/mash_compute_loglik.Rd man/mash_compute_posterior_matrices.Rd man/mash_compute_vloglik.Rd man/mash_estimate_corr_em.Rd man/mash_plot_meta.Rd man/mash_set_data.Rd man/mash_set_data_contrast.Rd man/mash_update_data.Rd man/optimize_pi.Rd man/posterior_cov.Rd man/posterior_mean.Rd man/posterior_mean_matrix.Rd man/scale_cov.Rd man/sim_contrast1.Rd man/sim_contrast2.Rd man/simple_sims.Rd man/simple_sims2.Rd man/teem_wrapper.Rd man/udi_model_matrix.Rd

mashr.Rproj

src/Makevars.in

src/RcppExports.cpp

src/extreme_deconvolution.cpp

src/mash.cpp

src/mash.h

tests/testthat.R

tests/testthat/calc_lik_matrix_data.RData

tests/testthat/compute_posterior_matrices_data.RData

tests/testthat/estimate_null_cor.rds

tests/testthat/estimate_null_cor_alpha.rds

stephenslab/mashr documentation built on Oct. 19, 2023, 4:14 p.m.

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stephenslab/mashr
Multivariate Adaptive Shrinkage

Files in stephenslab/mashr
Multivariate Adaptive Shrinkage

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stephenslab/mashr Multivariate Adaptive Shrinkage

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stephenslab/mashr
Multivariate Adaptive Shrinkage

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Multivariate Adaptive Shrinkage