ex_datasets: Datasets for an example region

In steveped/extraChIPs: Additional functions for working with ChIP-Seq data

Datasets for an example region

Description

Various example datasets for demonstrating analysis and visualisation strategies. Generation of all datasets is documented in system.file("script/ex_datasets.md", package = "extraChIPs")

ex_genes

Simple GRanges object with complete ranges for each gene

ex_trans

Exon & transcript level information prepared for plotting with Gviz or plotHFGC()

ex_prom

Regions defined as promoters

ex_hic

Example HiC interactions

Usage

data(ex_trans)

data(ex_genes)

data(ex_prom)

data(ex_hic)

Format

GRanges and GInteractions objects

All annotations are from GRCh37

An object of class GRanges of length 4.

An object of class GRanges of length 9.

An object of class GInteractions of length 1.

Examples

data(ex_trans)
ex_trans

steveped/extraChIPs documentation built on Aug. 1, 2024, 12:36 a.m.