antspymm_simlr_update_residuals: Update Residuals for SiMLR

In stnava/ANTsR: ANTs in R: Quantification Tools for Biomedical Images

Update Residuals for SiMLR

Description

This function updates residuals for SiMLR by applying different covariate transformations.

Usage

antspymm_simlr_update_residuals(
  mats,
  x,
  covariate,
  blaster2,
  allnna,
  n.comp,
  opt = NULL
)

Arguments

mats	A list of matrices.
x	An index to select a matrix from the list.
covariate	A character string specifying the covariate transformation to apply.
blaster2	A data frame containing additional covariate data.
allnna	A logical vector indicating non-missing data points.
n.comp	An integer specifying the number of components.
opt	A character string. If set to "opt", the function will print available covariate options.

Value

The residual matrix after applying the specified covariate transformation. If 'opt' is set to "opt", the function will print available covariate options and return NULL.

Examples

## Not run: 
antspymm_simlr_update_residuals(mats, 1, "whiten", blaster2, allnna, 5)
antspymm_simlr_update_residuals(opt = "opt")

## End(Not run)

stnava/ANTsR documentation built on April 13, 2025, 4:10 a.m.