Files in stnava/ANTsR
ANTs in R: Quantification Tools for Biomedical Images

.Rbuildignore
.gitignore
.gitmodules
.travis.yml
ANTsR.Rproj
DESCRIPTION
NAMESPACE
R/abpBrainExtraction.R R/abpN4.R R/alff.R R/antsAffineInitializer.R R/antsAverageImages.R R/antsBOLDNetworkAnalysis.R R/antsMotionCalculation.R R/antsMotionCorr.R R/antsMotionCorrStats.R R/antsSpatialICAfMRI.R R/ants_brain_extraction.R R/ants_motion_estimation.R R/antsrMotionCalculation.R R/antsrSurf.R R/antsr_resting_state_corr_eigenanat.R R/antsrimpute.R R/aslAveraging.R R/aslCensoring.R R/aslDenoiseR.R R/aslPerfusion.R R/basicInPaint.R R/bayesianCBF.R R/bayesianlm.R R/binarizeSNPs.R R/blockStimulus.R R/bloodPerfusionSVD.R R/clusterTimeSeries.R R/combineNuisancePredictors.R R/compcor.R R/composeTransformsToField.R R/conjGradS.R R/convolveImage.R R/corw.R R/createJacobianDeterminantImage.R R/createWarpedGrid.R R/crossvalidatedR2.R R/cvEigenanatomy.R R/eanatDef.R R/eigSeg.R R/estSmooth.R R/euler.R R/exemplarInpainting.R R/extractDenseNetwork.R R/fastMarchingExtension.R R/filterfMRIforNetworkAnalysis.R R/frequencyFilterfMRI.R R/fsl2antsrTransform.R R/geoSeg.R R/getASLNoisePredictors.R R/getAverageOfTimeSeries.R R/getCentroids.R R/getMultivariateTemplateCoordinates.R R/getNetwork.R R/getTemplateCoordinates.R R/get_perfusion_predictors.R R/getfMRInuisanceVariables.R R/hemodynamicRF.R R/icawhiten.R R/image2ClusterImages.R R/imageListToMatrix.R R/imagesToMatrix.R R/initializeEigenanatomy.R R/int_antsExtractXptrAsString.R R/int_antsProcessArguments.R R/interleaveMatrixWithItself.R R/invariantImageSimilarity.R R/joinEigenanatomy.R R/jointLabelFusion.R R/kellyKapowski.R R/labelGeometryMeasures.R R/labelImageCentroids.R R/labels2matrix.R R/make3ViewPNG.R R/makeDiffGraph.R R/makeGraph.R R/makePowersPointsImage.R R/maskImage.R R/matrix2timeseries.R R/matrixToImages.R R/mergeLabels.R R/mni2tal.R R/mrvnrfs.R R/multiLabelMorphology.R R/multiResRandomForestRegression.R R/multichannelPCA.R R/multiscaleSVDxpts.R R/networkCorrelation.R R/networkCovariance.R R/networkEiganat.R R/networkOverlap.R R/pairwiseImageDistanceMatrix.R R/partialVolumeCorrection.R R/perfusionregression.R R/petSUVR.R R/plotBasicNetwork.R R/plotPrettyGraph.R R/powersACTrsfMRIprocessing.R R/preprocessRestingBOLD.R R/preprocessfMRI.R R/priorBasedSegmentation.R R/quantifyCBF.R R/quantifySNPs.R R/randsccan.R R/rapidlyInspectImageData.R R/reduceNetwork.R R/reflectImage.R R/regressProjections.R R/regressionNetworkViz.R R/reho.R R/renderImageLabels.R R/renderSurfaceFunction.R R/renormalizeProbabilityImages.R R/reorientImage.R R/resels.R R/rfSegmentation.R R/rftPval.R R/rftResults.R R/robustMatrixTransform.R R/rsfDenoise.R R/save.ANTsR.R R/segmentShapeFromImage.R R/segmentationRefinement.R R/skeletonize.R R/snapColors.R R/sparseDecom.R R/sparseDecom2.R R/sparseDecom2boot.R R/sparseDecomboot.R R/sparseRegression.R R/spatialbayesianlm.R R/splitData.R R/splitNDImageToList.R R/statFieldThresh.R R/subgradientL1Regression.R R/subjectDataToGroupDataFrame.R R/summarizeClusters.R R/taskFMRI.R R/temporalwhiten.R R/timeseries2matrix.R R/timeseriesN3.R R/timeserieswindow2matrix.R R/vwnrfs.R R/weingartenImageCurvature.R R/whiten.R R/writeNormalizedPopulationData.R README.md
_config.yml
appveyor.yml
cleanup
configure
configure.win
data/.Rapp.history
data/DesikanKillianyTourville.csv
data/DesikanKillianyTourville.rda
data/aal.csv
data/aal.rda
data/antsrVersions.csv
data/bold_correlation_matrix.csv
data/bold_correlation_matrix.rda
data/powers_areal_mni_itk.csv
data/powers_areal_mni_itk.rda
data/tracts.csv
data/tracts.rda
docs/articles/ANTsR.html
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docs/authors.html
docs/index.html
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docs/pkgdown.css
docs/pkgdown.js
docs/reference/DesikanKillianyTourville.html
docs/reference/aal.html
docs/reference/abpBrainExtraction.html
docs/reference/abpN4.html
docs/reference/affineInitializer.html
docs/reference/alffmap.html
docs/reference/antsAverageImages.html
docs/reference/antsBOLDNetworkAnalysis.html
docs/reference/antsMotionCalculation.html
docs/reference/antsMotionCorr.html
docs/reference/antsSpatialICAfMRI.html
docs/reference/antsrMotionCalculation.html
docs/reference/antsrSurf.html
docs/reference/antsrVersions.html
docs/reference/antsrVol.html
docs/reference/antsrimpute.html
docs/reference/aslAveraging.html
docs/reference/aslCensoring.html
docs/reference/aslDenoiseR.html
docs/reference/aslPerfusion.html
docs/reference/basicInPaint.html
docs/reference/bayesianCBF.html
docs/reference/bayesianlm.html
docs/reference/blockStimulus.html
docs/reference/bloodPerfusionSVD.html
docs/reference/bold_correlation_matrix.html
docs/reference/clusterTimeSeries.html
docs/reference/combineNuisancePredictors.html
docs/reference/compcor.html
docs/reference/composeTransformsToField.html
docs/reference/computeDVARS.html
docs/reference/computeDVARSspatialMap.html
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docs/reference/corw.html
docs/reference/createJacobianDeterminantImage.html
docs/reference/createWarpedGrid.html
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docs/reference/getCenterOfMass.html
docs/reference/getCentroids.html
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docs/reference/tracts.html
docs/reference/trapz.html
docs/reference/vectorToMultichannel.html
docs/reference/vwnrfs.html
docs/reference/vwnrfs.predict.html
docs/reference/weingartenImageCurvature.html
docs/reference/whiten.html
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inst/doc/ANTsR.R inst/doc/ANTsR.Rmd
inst/doc/ANTsR.html
inst/doc/MultiChannel.R inst/doc/MultiChannel.Rmd
inst/doc/MultiChannel.html
inst/doc/RestingBOLD.R inst/doc/RestingBOLD.Rmd
inst/doc/RestingBOLD.html
inst/doc/antsrTransform.R inst/doc/antsrTransform.Rmd
inst/doc/antsrTransform.html
inst/doc/deformationSimulation.R inst/doc/deformationSimulation.Rmd
inst/doc/deformationSimulation.html
inst/doc/iMath.R inst/doc/iMath.Rmd
inst/doc/iMath.html
inst/doc/multivarTemplateCoordinates.R inst/doc/multivarTemplateCoordinates.Rmd
inst/doc/multivarTemplateCoordinates.html
inst/doc/rfLesionSeg.R inst/doc/rfLesionSeg.Rmd
inst/doc/rfLesionSeg.html
inst/include/RcppANTsR.h
inst/include/RcppANTsR/RcppANTsR_ImageBaseDef.h
inst/include/RcppANTsR/RcppANTsR_ImageBaseImp.h
inst/include/RcppANTsR/RcppANTsR_ImageDef.h
inst/include/RcppANTsR/RcppANTsR_ImageImp.h
inst/include/RcppANTsR/RcppANTsR_ImageIteratorDef.h
inst/include/RcppANTsR/RcppANTsR_ImageIteratorImp.h
inst/include/RcppANTsR/RcppANTsR_TransformDef.h
inst/include/RcppANTsR/RcppANTsR_TransformImp.h
inst/include/RcppANTsR/RcppANTsR_VectorImageDef.h
inst/include/RcppANTsR/RcppANTsR_VectorImageImp.h
inst/include/RcppANTsR/orig.h
man/DesikanKillianyTourville.Rd man/aal.Rd man/abpBrainExtraction.Rd man/abpN4.Rd man/affineInitializer.Rd man/alffmap.Rd man/antsAverageImages.Rd man/antsBOLDNetworkAnalysis.Rd man/antsMotionCalculation.Rd man/antsMotionCorr.Rd man/antsSpatialICAfMRI.Rd man/antsrMotionCalculation.Rd man/antsrSurf.Rd man/antsrVersions.Rd man/antsrVol.Rd man/antsrimpute.Rd man/aslAveraging.Rd man/aslCensoring.Rd man/aslDenoiseR.Rd man/aslPerfusion.Rd man/basicInPaint.Rd man/bayesianCBF.Rd man/bayesianlm.Rd man/blockStimulus.Rd man/bloodPerfusionSVD.Rd man/bold_correlation_matrix.Rd man/clusterTimeSeries.Rd man/combineNuisancePredictors.Rd man/compcor.Rd man/composeTransformsToField.Rd man/computeDVARS.Rd man/computeDVARSspatialMap.Rd man/convolveImage.Rd man/corw.Rd man/createJacobianDeterminantImage.Rd man/createWarpedGrid.Rd man/crossvalidatedR2.Rd man/cvEigenanatomy.Rd man/deconvolutionSVD.Rd man/eanatDef.Rd man/eanatSelect.Rd man/eigSeg.Rd man/estSmooth.Rd man/euler.Rd man/exemplarInpainting.Rd man/fMRINormalization.Rd man/fastMarchingExtension.Rd man/filterfMRIforNetworkAnalysis.Rd man/frequencyFilterfMRI.Rd man/fsl2antsrTransform.Rd man/geoSeg.Rd man/getASLNoisePredictors.Rd man/getAverageOfTimeSeries.Rd man/getCenterOfMass.Rd man/getCentroids.Rd man/getMultiResFeatureMatrix.Rd man/getMultivariateTemplateCoordinates.Rd man/getTemplateCoordinates.Rd man/getfMRInuisanceVariables.Rd man/hemodynamicRF.Rd man/icawhiten.Rd man/image2ClusterImages.Rd man/imageDomainToSpatialMatrix.Rd man/imageListToMatrix.Rd man/imagesToMatrix.Rd man/initializeEigenanatomy.Rd man/interleaveMatrixWithItself.Rd man/invariantImageSimilarity.Rd man/joinEigenanatomy.Rd man/jointLabelFusion.Rd man/jointSmoothMatrixReconstruction.Rd man/kellyKapowski.Rd man/knnSmoothImage.Rd man/knnSmoothingMatrix.Rd man/labelGeometryMeasures.Rd man/labelImageCentroids.Rd man/labels2matrix.Rd man/lowrankRowMatrix.Rd man/make3ViewPNG.Rd man/makeGraph.Rd man/makePointsImage.Rd man/makePowersPointsImage.Rd man/maskImage.Rd man/matrix2timeseries.Rd man/matrixToImages.Rd man/mergeListToNDImage.Rd man/milr.Rd man/milr.predict.Rd man/mni2tal.Rd man/motion_correction.Rd man/mrvnrfs.Rd man/mrvnrfs.predict.Rd man/multiLabelMorphology.Rd man/multiResRandomForestRegression.Rd man/multichannelPCA.Rd man/multichannelToVector.Rd man/multiscaleSVD.Rd man/networkEiganat.Rd man/orthogonalizeAndQSparsify.Rd man/pairwiseImageDistanceMatrix.Rd man/partialVolumeCorrection.Rd man/perfusionregression.Rd man/petSUVR.Rd man/plotBasicNetwork.Rd man/plotPrettyGraph.Rd man/powers_areal_mni_itk.Rd man/preprocessRestingBOLD.Rd man/preprocessfMRI.Rd man/priorBasedSegmentation.Rd man/quantifyCBF.Rd man/quantifySNPs.Rd man/randcca.Rd man/randsvd.Rd man/randwhiten.Rd man/rapidlyInspectImageData.Rd man/readNormalizedPopulationData.Rd man/reflectImage.Rd man/regressProjections.Rd man/regressionNetworkViz.Rd man/reho.Rd man/renderImageLabels.Rd man/renderSurfaceFunction.Rd man/renormalizeProbabilityImages.Rd man/reorientImage.Rd man/resels.Rd man/rfSegmentation.Rd man/rfSegmentationPredict.Rd man/rftPval.Rd man/rftResults.Rd man/robustMatrixTransform.Rd man/rsfDenoise.Rd man/save.ANTsR.Rd man/segmentShapeFromImage.Rd man/segmentationRefinement.predict.Rd man/segmentationRefinement.train.Rd man/skeletonize.Rd man/smoothAppGradCCA.Rd man/smoothMatrixPrediction.Rd man/smoothMultiRegression.Rd man/smoothRegression.Rd man/sparseDecom.Rd man/sparseDecom2.Rd man/sparseDecom2boot.Rd man/sparseDecomboot.Rd man/sparseDistanceMatrix.Rd man/sparseDistanceMatrixXY.Rd man/sparseRegression.Rd man/spatialbayesianlm.Rd man/splitData.Rd man/splitMask.Rd man/splitNDImageToList.Rd man/statFieldThresh.Rd man/subgradientL1Regression.Rd man/subjectDataToGroupDataFrame.Rd man/taskFMRI.Rd man/temporalwhiten.Rd man/testEanat.Rd man/timeseries2matrix.Rd man/timeseriesN3.Rd man/timeserieswindow2matrix.Rd man/tracts.Rd man/trapz.Rd man/vectorToMultichannel.Rd man/vwnrfs.Rd man/vwnrfs.predict.Rd man/weingartenImageCurvature.Rd man/whiten.Rd man/writeNormalizedPopulationData.Rd
src/CreateJacobianDeterminantImage.cpp
src/KellyKapowski.cpp
src/LabelGeometryMeasures.cpp
src/Makevars.win
src/PatchAnalysis.h
src/PatchAnalysis.hxx
src/RcppANTsR_Transform.h
src/antsAffineInitializer.cpp
src/antsJointFusion.cpp
src/antsMotionCorr.cpp
src/antsMotionCorrStats.cpp
src/antsr.h
src/fastMarchingExtension.cpp
src/fsl2antsrTransform.cpp
src/imagesToMatrix.cpp
src/init.c
src/invariantImageSimilarity.cpp
src/itkRIPMMARCImageFilter.h
src/itkRIPMMARCImageFilter.hxx
src/reflectionMatrix.cpp
src/reorientImage.cpp
src/sccanX.cpp
src/sccaner.cpp
src/timeSeriesSubtraction.cpp
src/weingartenImageCurvature.cpp
tests/testthat.R
tests/testthat/output.nii.gz
tests/testthat/test-Atropos.R tests/testthat/test-antsImage.R tests/testthat/test-antsImageClone.R tests/testthat/test-antsImageRead.R tests/testthat/test-antsImageWrite.R tests/testthat/test-iMath.R
vignettes/.gitignore
vignettes/ANTsR.Rmd vignettes/MultiChannel.Rmd
vignettes/REFERENCES.bib
vignettes/RestingBOLD.Rmd vignettes/antsrTransform.Rmd vignettes/deformationSimulation.Rmd vignettes/iMath.Rmd vignettes/multivarTemplateCoordinates.Rmd vignettes/rfLesionSeg.Rmd
stnava/ANTsR documentation built on Nov. 28, 2017, 8:04 a.m.