knnSmoothImage: k-nearest neighbors constrained image smoothing

In stnava/ANTsR: ANTs in R: Quantification Tools for Biomedical Images

k-nearest neighbors constrained image smoothing

Description

Compute a smoothing matrix based on an input matrix of point coordinates as well as neighborhood intensity patterns. this performs a form of edge preserving smoothing.

Usage

knnSmoothImage(
  img,
  mask,
  radius,
  intensityWeight = 0.1,
  spatialSigma = 20,
  iterations = 1,
  returnMatrix = FALSE
)

Arguments

img	input image to smooth
mask	input image mask
radius	number of neighbors, higher causes more smoothing
intensityWeight	weight for intensity component, value 1 will weight local voxel intensity roughly equally to spatial component
spatialSigma	for gaussian defining spatial distances
iterations	number of iterations over which to apply smoothing kernel
returnMatrix	boolean, will return smoothing matrix instead of image.

Value

antsImage is output

Author(s)

Avants BB

Examples

## Not run: 
img <- antsImageRead(getANTsRData("r16"))
mask <- getMask(img)
simg <- knnSmoothImage(
  img = img, mask = mask, radius = 2, intensityWeight = 1,
  spatialSigma = 1.5, iterations = 1
)

## End(Not run)

stnava/ANTsR documentation built on April 16, 2024, 12:17 a.m.