createJacobianDeterminantImage: createJacobianDeterminantImage

View source: R/createJacobianDeterminantImage.R

createJacobianDeterminantImageR Documentation

createJacobianDeterminantImage

Description

Compute the jacobian determinant from a transformation file

Usage

createJacobianDeterminantImage(domainImg, tx, doLog = FALSE, geom = FALSE)

Arguments

domainImg

image that defines transformation domain

tx

deformation transformation file name

doLog

return the log jacobian

geom

use the geometric jacobian calculation (boolean)

Value

jacobianImage

Author(s)

BB Avants

Examples

fi <- antsImageRead(getANTsRData("r16"), 2)
mi <- antsImageRead(getANTsRData("r64"), 2)
fi <- resampleImage(fi, c(128, 128), 1, 0)
mi <- resampleImage(mi, c(128, 128), 1, 0)
mytx <- antsRegistration(fixed = fi, moving = mi, typeofTransform = c("SyN"))
jac <- createJacobianDeterminantImage(fi, mytx$fwdtransforms[[1]], 1)
# plot(jac)

stnava/ANTsR documentation built on Sept. 13, 2024, 7:10 a.m.