genetic simulation

ashRemoveGeneticPops	Subset built-in ash data based on populations
ashSetupLandscape	Establish simulation landscape
assignRefugiaFromAbundanceRaster	Rescale carrying capacity rasters and assign refugia
chooseRefugeCells	Choose refuge cells from a plot of the landscape used in the...
def_grid_pred2	Convert raster suitability to habitat suitability surface for...
distancePDF	simple distance density function for short and ldd
doesGmapCombine	Tests aggregation scheme before coalescent simulation
drawParms	Draw simulation parameter values from a control file with...
enmScenarios	Description of alternative ENMs
forwardGUI	Shiny interface for population model
get.gSum	process genotype data
get.nSNP	get number of snps
getpophist2.cells	getpophist2.cells
holoSimCell	holoSimCell
holoStats	Calculate population genetic summary statistics
imputed	Genotypes for green ash (_Fraxinus pennsylvanica_)
integratedDispMat	calc dispersal into a cell
integratedMigMat	calc dispersal into a cell
make.gmap	Make a genetic subset map for rectangular landscape
makePopdf	Create a popDF object
newLandscapeDim	Resample a raster brick into a new resolution
NvecNAs	Convert population size in unsuitable cells to NA
parseColhist	parse the colhist object that comes out of getpophist.cells...
plotCellsOnSuit	plot the location of cells on landscape
plothist	plot the population history
plotHistSlice	plot a slice of the landscape history
pollenPulls	Prediction surfaces for green ash pollen
pophist.aggregate	Aggregate a pophist object into genetic populations
pophistToArray	Convert "pophist" object to an array
popmap	Association between green ash IDs and populations
pts	Geographic coordinates of green ash populations
runFSC_step_agg3	Run fastsimcoal
testPophist	Test pophist object before coalescent simulation
transSampLoc	Re-project sample locations into simulation projection