Files in stranda/quantsel

Spatially explicit population genetic simulations with polygenic traits and selection

R/advance.landscape.R R/allelecount.landscape.R R/allelefreq.landscape.R R/amova.R R/analysis.R R/carry-stage.R R/carry.landscape.R R/cell_stats.R R/demography.landscape.R R/distance-functions.R R/dmixed.R R/exp.het.landscape.R R/fdist.R R/genepopR.R R/generatelocations.R R/geneseq.R R/helpers.R R/indxfreq.R R/is.landscape.R R/is.nsquare.R R/landscape.clean.R R/landscape.democol.R R/landscape.extinct.R R/landscape.kernel.demos.R R/landscape.kernel.plot.R R/landscape.nophen.R R/landscape.sample.R R/landscape.set.k.R R/locus.R R/locusvec.R R/makealleles.R R/mixed-dist-prob-functions.R R/neighborhood.R R/new.epoch.R R/new.example.landscape.R R/new.expression.R R/new.floatparam.R R/new.individuals.R R/new.intparam.R R/new.intparam.land.R R/new.landscape.default.R R/new.landscape.empty.R R/new.local.demo.R R/new.locus.R R/new.switchparam.land.R R/new.traits.R R/obs.het.landscape.R R/phenotypes.R R/ploidy.R R/plot.landscape.locations.R R/plot.landscape.popsizedist.R R/plot.landscape.progeny.R R/plot.landscape.stgsizedist.R R/plotfuns.R R/popdensity.R R/populations.R R/quantsel-package.R R/raster2popcrds.R R/reproduce.landscape.R R/rm.lambda.R R/simsum.R R/simulate.landscape.R R/states.R R/survive.landscape.R R/test.landscape.function.R R/typelookup.R R/utilities.R README.md inst/examples/fourloc/testPlasticity.R inst/examples/fourloc/testPlasticity_mt.R inst/examples/fourloc/testSelFecundity.R inst/examples/fourloc/testSelFecundity_mt.R inst/examples/fourloc/testSimple.R inst/examples/oldtest/newlandscape.R inst/examples/oldtest/test2.R inst/examples/oldtest/test3.R inst/examples/oldtest/test4.R inst/examples/oldtest/test5.R inst/examples/oldtest/test6.R inst/examples/oldtest/test7.R inst/examples/oldtest/test8.R inst/examples/oldtest/testCrash.R inst/examples/oldtest/testFull.R inst/examples/oldtest/testFuncs.R inst/examples/oldtest/testPhenoFunction.R inst/examples/oldtest/testPhenoFunction2.R inst/examples/oldtest/testRversions.R inst/examples/oldtest/testSimple.R inst/examples/oneloc/Rplots.pdf inst/examples/oneloc/selection_examples.pdf inst/examples/oneloc/testPlasticity.R inst/examples/oneloc/testPlasticity_mt.R inst/examples/oneloc/testSelFecundity.R inst/examples/oneloc/testSelFecundity_mt.R inst/examples/oneloc/testSimple.R inst/examples/spartina/different_selection.R inst/examples/spartina/different_selection_mt.R inst/examples/spartina/onetrait.R inst/examples/spartina/onetrait_mt.R inst/examples/spartina/plasticOnly.R inst/examples/spartina/plasticOnly_mt.R inst/examples/spartina/pleiotropy.R inst/examples/spartina/pleiotropy_mt.R inst/examples/spartina/plot.selection.R inst/examples/spartina/setup_demography.R inst/examples/spartina/twotrait.R inst/examples/spartina/twotrait_mt.R inst/examples/spread.R inst/examples/testCrash.R inst/examples/testFull.R inst/examples/testSelFecundity.R inst/examples/testsuit/rasterback.R inst/examples/testsuit/rasterback_small.R inst/examples/testsuit/spread.R man/SimulationComponents.Rd man/calc.k.vec.Rd man/is.landscape.Rd man/landscape.allelecount.Rd man/landscape.allelefreq.Rd man/landscape.amova.Rd man/landscape.amova.locus.Rd man/landscape.amova.pairwise.Rd man/landscape.clean.Rd man/landscape.democol.Rd man/landscape.demography.Rd man/landscape.exp.het.Rd man/landscape.genepop.output.Rd man/landscape.generate.locations.Rd man/landscape.hab.stats.Rd man/landscape.locus.Rd man/landscape.locus.states.Rd man/landscape.locusvec.Rd man/landscape.new.empty.Rd man/landscape.new.epoch.Rd man/landscape.new.example.Rd man/landscape.new.expression.Rd man/landscape.new.floatparam.Rd man/landscape.new.individuals.Rd man/landscape.new.intparam.Rd man/landscape.new.local.demo.Rd man/landscape.new.locus.Rd man/landscape.new.switchparam.Rd man/landscape.nophen.Rd man/landscape.obs.het.Rd man/landscape.ploidy.Rd man/landscape.plot.locations.Rd man/landscape.pollen.kernel.demo.Rd man/landscape.populations.Rd man/landscape.sample.Rd man/landscape.simulate.Rd man/landscape.states.Rd man/landscape.test.function.Rd man/landscape.write.fdist.Rd man/raster2popcrds.Rd