Man pages for stranda/unpakathon
Code Used and Data Needed to work with unpak data
| allfeat | all of the TAIR10 genes and sub-features with coordinates |
| allmeth | all of the TAIR10 genes and sub-features with coordinates and... |
| datestamp | last update of unpakathon data |
| families | TAIR10 Gene families indexed by gene |
| findOutlier | Identify Outliers |
| geneaccession | Just holds accession numbers and corresponding ATI locus ids |
| geneont | TAIR10 Gene Ontology indexed by gene |
| independent | Wide Format Version of additional quantitative information on... |
| methData | Locations and positions of methylation sites in the TAIR10... |
| mutationCat | takes a vector of accession numbers and returns a vector of... |
| phenolong | Long Format Version of The unpak Phenotypes |
| phenowide | Wide Format Version of The unpak Phenotypes |
| plotChrom | plot a phenotype along a chromosome |
| SalkInsert | dataframe with the insert positions (within genes) of all the... |
| SalkPos | dataframe with the insert positions of all the Salk Lines |
| slideWinGenes | make a sliding window of gene density |
| slideWinMeth | make a sliding window of methylation density |
| spread | takes a long phenotype object (with plantIDs) and spreads it... |
| tdna | TDNRatio data indexed by Accession_idAccession |
| thousandAndOne | 1001 genome accession information |
| variants | polymorph1001 variant data for loci whith phenotypes |
