Est2Phase: Estimate characterized parameters for a given scRNA-seq data...

In suke18/POWSC: Simulation, power evaluation, and sample size recommendation for single cell RNA-seq

Description

These parameters include four gene-wise parameters and two cell-wise parameters.

Usage

Est2Phase(sce, low.prob = 0.99)

Arguments

sce	SingleCellExperiment object with assays(sce)[[1]] is the count matrix or input directly
low.prob	lower bound probability for phase I

Value

a list of needed estimated parameters

Examples

data("es_mef_sce")
sce = es_mef_sce[, colData(es_mef_sce)$cellTypes == "fibro"]
set.seed(123)
rix = sample(1:nrow(sce), 500)
sce = sce[rix, ]
estParas = Est2Phase(sce)

suke18/POWSC documentation built on April 2, 2021, 4:34 a.m.