Files in sunny-zq/PICS
PICS (Pathway-guided Identification of Cancer Subgroups)

.Rbuildignore
.Rhistory
.Rproj.user/1EA410B3/build_options
.Rproj.user/1EA410B3/cpp-definition-cache
.Rproj.user/1EA410B3/pcs/debug-breakpoints.pper
.Rproj.user/1EA410B3/pcs/files-pane.pper
.Rproj.user/1EA410B3/pcs/packages-pane.pper
.Rproj.user/1EA410B3/pcs/source-pane.pper
.Rproj.user/1EA410B3/pcs/windowlayoutstate.pper
.Rproj.user/1EA410B3/pcs/workbench-pane.pper
.Rproj.user/1EA410B3/persistent-state
.Rproj.user/1EA410B3/rmd-outputs
.Rproj.user/1EA410B3/saved_source_markers
.Rproj.user/1EA410B3/sdb/prop/11BB0761
.Rproj.user/1EA410B3/sdb/prop/171C6FB3
.Rproj.user/1EA410B3/sdb/prop/1D79B149
.Rproj.user/1EA410B3/sdb/prop/1DBC7173
.Rproj.user/1EA410B3/sdb/prop/1FBFF4B4
.Rproj.user/1EA410B3/sdb/prop/225358EC
.Rproj.user/1EA410B3/sdb/prop/2868D145
.Rproj.user/1EA410B3/sdb/prop/2B83476C
.Rproj.user/1EA410B3/sdb/prop/2C6A2E3D
.Rproj.user/1EA410B3/sdb/prop/32055EF7
.Rproj.user/1EA410B3/sdb/prop/3341E645
.Rproj.user/1EA410B3/sdb/prop/3416C4E5
.Rproj.user/1EA410B3/sdb/prop/34C1EF6A
.Rproj.user/1EA410B3/sdb/prop/41833CDB
.Rproj.user/1EA410B3/sdb/prop/458F728D
.Rproj.user/1EA410B3/sdb/prop/47B1DC4D
.Rproj.user/1EA410B3/sdb/prop/4BDA86EE
.Rproj.user/1EA410B3/sdb/prop/4C171825
.Rproj.user/1EA410B3/sdb/prop/4F6CC4D6
.Rproj.user/1EA410B3/sdb/prop/51C34389
.Rproj.user/1EA410B3/sdb/prop/587DFCA8
.Rproj.user/1EA410B3/sdb/prop/5B05D1F2
.Rproj.user/1EA410B3/sdb/prop/6553E4DE
.Rproj.user/1EA410B3/sdb/prop/6BE4C46
.Rproj.user/1EA410B3/sdb/prop/6E4D768F
.Rproj.user/1EA410B3/sdb/prop/6EE6BB95
.Rproj.user/1EA410B3/sdb/prop/705A5E4C
.Rproj.user/1EA410B3/sdb/prop/7850568F
.Rproj.user/1EA410B3/sdb/prop/79555FB3
.Rproj.user/1EA410B3/sdb/prop/79EDD2AD
.Rproj.user/1EA410B3/sdb/prop/7D18B981
.Rproj.user/1EA410B3/sdb/prop/843916F4
.Rproj.user/1EA410B3/sdb/prop/8B7E5854
.Rproj.user/1EA410B3/sdb/prop/8F7D440
.Rproj.user/1EA410B3/sdb/prop/92696276
.Rproj.user/1EA410B3/sdb/prop/95539DCC
.Rproj.user/1EA410B3/sdb/prop/97B75787
.Rproj.user/1EA410B3/sdb/prop/9A76395B
.Rproj.user/1EA410B3/sdb/prop/9B52245
.Rproj.user/1EA410B3/sdb/prop/9C022D52
.Rproj.user/1EA410B3/sdb/prop/9CE19CB0
.Rproj.user/1EA410B3/sdb/prop/ACC1C73D
.Rproj.user/1EA410B3/sdb/prop/ADA3DAF9
.Rproj.user/1EA410B3/sdb/prop/AE92C671
.Rproj.user/1EA410B3/sdb/prop/B28924B6
.Rproj.user/1EA410B3/sdb/prop/BAF34A8F
.Rproj.user/1EA410B3/sdb/prop/BC7D3321
.Rproj.user/1EA410B3/sdb/prop/BC8FB11A
.Rproj.user/1EA410B3/sdb/prop/BE0133F2
.Rproj.user/1EA410B3/sdb/prop/C03BE282
.Rproj.user/1EA410B3/sdb/prop/C3C9D315
.Rproj.user/1EA410B3/sdb/prop/C6591C32
.Rproj.user/1EA410B3/sdb/prop/C8A9DF41
.Rproj.user/1EA410B3/sdb/prop/CFCBC1A
.Rproj.user/1EA410B3/sdb/prop/D40C14AF
.Rproj.user/1EA410B3/sdb/prop/D42328C5
.Rproj.user/1EA410B3/sdb/prop/D449BDC7
.Rproj.user/1EA410B3/sdb/prop/D9E45C23
.Rproj.user/1EA410B3/sdb/prop/E694E8F2
.Rproj.user/1EA410B3/sdb/prop/E6A2DDB7
.Rproj.user/1EA410B3/sdb/prop/E72A6BBF
.Rproj.user/1EA410B3/sdb/prop/E88F646D
.Rproj.user/1EA410B3/sdb/prop/E9909102
.Rproj.user/1EA410B3/sdb/prop/EB9EDDD8
.Rproj.user/1EA410B3/sdb/prop/EDAE41AB
.Rproj.user/1EA410B3/sdb/prop/F0D16132
.Rproj.user/1EA410B3/sdb/prop/F49F54C7
.Rproj.user/1EA410B3/sdb/prop/F544707C
.Rproj.user/1EA410B3/sdb/prop/F5942302
.Rproj.user/1EA410B3/sdb/prop/F7F4053B
.Rproj.user/1EA410B3/sdb/prop/FA7D91C7
.Rproj.user/1EA410B3/sdb/prop/FC3B4075
.Rproj.user/1EA410B3/sdb/prop/FCDEF4EF
.Rproj.user/1EA410B3/sdb/prop/FE074536
.Rproj.user/1EA410B3/sdb/prop/INDEX
.Rproj.user/1EA410B3/sdb/s-88E04DD9/51FBD6EC
.Rproj.user/1EA410B3/sdb/s-88E04DD9/9D6B2C21
.Rproj.user/1EA410B3/sdb/s-88E04DD9/lock_file
.Rproj.user/1EA410B3/sdb/s-BF2115D/42D5A729
.Rproj.user/1EA410B3/sdb/s-BF2115D/51FBD6EC
.Rproj.user/1EA410B3/sdb/s-BF2115D/9D6B2C21
.Rproj.user/1EA410B3/sdb/s-BF2115D/lock_file
.Rproj.user/1EA410B3/sdb/s-E25E895A/51FBD6EC
.Rproj.user/1EA410B3/sdb/s-E25E895A/9D6B2C21
.Rproj.user/1EA410B3/sdb/s-E25E895A/lock_file
.Rproj.user/1EA410B3/session-persistent-state
.Rproj.user/B1ACA583/cpp-definition-cache
.Rproj.user/B1ACA583/pcs (1)/debug-breakpoints.pper
.Rproj.user/B1ACA583/pcs (1)/files-pane.pper
.Rproj.user/B1ACA583/pcs (1)/packages-pane.pper
.Rproj.user/B1ACA583/pcs (1)/source-pane.pper
.Rproj.user/B1ACA583/pcs (1)/windowlayoutstate.pper
.Rproj.user/B1ACA583/pcs (1)/workbench-pane.pper
.Rproj.user/B1ACA583/pcs/debug-breakpoints.pper
.Rproj.user/B1ACA583/pcs/files-pane.pper
.Rproj.user/B1ACA583/pcs/source-pane.pper
.Rproj.user/B1ACA583/pcs/windowlayoutstate.pper
.Rproj.user/B1ACA583/pcs/workbench-pane.pper
.Rproj.user/B1ACA583/persistent-state
.Rproj.user/B1ACA583/rmd-outputs
.Rproj.user/B1ACA583/saved_source_markers
.Rproj.user/B1ACA583/sdb/prop/15C6397D
.Rproj.user/B1ACA583/sdb/prop/1AF3FA1A
.Rproj.user/B1ACA583/sdb/prop/21A6EAE1
.Rproj.user/B1ACA583/sdb/prop/23D90696
.Rproj.user/B1ACA583/sdb/prop/36D676CA
.Rproj.user/B1ACA583/sdb/prop/3DD44C56
.Rproj.user/B1ACA583/sdb/prop/4AD7C8DD
.Rproj.user/B1ACA583/sdb/prop/59DDB542
.Rproj.user/B1ACA583/sdb/prop/60407B9E
.Rproj.user/B1ACA583/sdb/prop/60AB9D30
.Rproj.user/B1ACA583/sdb/prop/61DA2CB1
.Rproj.user/B1ACA583/sdb/prop/63123B55
.Rproj.user/B1ACA583/sdb/prop/65DF4F97
.Rproj.user/B1ACA583/sdb/prop/68816031
.Rproj.user/B1ACA583/sdb/prop/739A0A49
.Rproj.user/B1ACA583/sdb/prop/750FC758
.Rproj.user/B1ACA583/sdb/prop/7986CBB1
.Rproj.user/B1ACA583/sdb/prop/7D8AF75E
.Rproj.user/B1ACA583/sdb/prop/8BED661E
.Rproj.user/B1ACA583/sdb/prop/9048C966
.Rproj.user/B1ACA583/sdb/prop/9EC16ADC
.Rproj.user/B1ACA583/sdb/prop/B051DA12
.Rproj.user/B1ACA583/sdb/prop/C5BEED7E
.Rproj.user/B1ACA583/sdb/prop/D1A5A1A2
.Rproj.user/B1ACA583/sdb/prop/DFEE4130
.Rproj.user/B1ACA583/sdb/prop/F4335A50
.Rproj.user/B1ACA583/sdb/prop/INDEX
.Rproj.user/B1ACA583/session-persistent-state
.Rproj.user/F0159ABB/cpp-definition-cache
.Rproj.user/F0159ABB/pcs/debug-breakpoints.pper
.Rproj.user/F0159ABB/pcs/files-pane.pper
.Rproj.user/F0159ABB/pcs/source-pane.pper
.Rproj.user/F0159ABB/pcs/windowlayoutstate.pper
.Rproj.user/F0159ABB/pcs/workbench-pane.pper
.Rproj.user/F0159ABB/persistent-state
.Rproj.user/F0159ABB/rmd-outputs
.Rproj.user/F0159ABB/saved_source_markers
.Rproj.user/F0159ABB/sdb/per/t/E5614A39
.Rproj.user/F0159ABB/sdb/prop/167BEFDD
.Rproj.user/F0159ABB/sdb/prop/1E7F1033
.Rproj.user/F0159ABB/sdb/prop/3F3FA4EC
.Rproj.user/F0159ABB/sdb/prop/3F9D7168
.Rproj.user/F0159ABB/sdb/prop/42D36B76
.Rproj.user/F0159ABB/sdb/prop/465CE6C4
.Rproj.user/F0159ABB/sdb/prop/6652E541
.Rproj.user/F0159ABB/sdb/prop/72BF43D7
.Rproj.user/F0159ABB/sdb/prop/77CA279
.Rproj.user/F0159ABB/sdb/prop/7E03C542
.Rproj.user/F0159ABB/sdb/prop/854156F8
.Rproj.user/F0159ABB/sdb/prop/8BF7CED4
.Rproj.user/F0159ABB/sdb/prop/929586EE
.Rproj.user/F0159ABB/sdb/prop/939A4926
.Rproj.user/F0159ABB/sdb/prop/A4739410
.Rproj.user/F0159ABB/sdb/prop/A5239F45
.Rproj.user/F0159ABB/sdb/prop/AD1728BB
.Rproj.user/F0159ABB/sdb/prop/AD84867D
.Rproj.user/F0159ABB/sdb/prop/AF774024
.Rproj.user/F0159ABB/sdb/prop/C22C977D
.Rproj.user/F0159ABB/sdb/prop/C38F810
.Rproj.user/F0159ABB/sdb/prop/CC6DCAFB
.Rproj.user/F0159ABB/sdb/prop/D00D14CA
.Rproj.user/F0159ABB/sdb/prop/D18351B1
.Rproj.user/F0159ABB/sdb/prop/D8C1EE91
.Rproj.user/F0159ABB/sdb/prop/DDB664A
.Rproj.user/F0159ABB/sdb/prop/E8E04C16
.Rproj.user/F0159ABB/sdb/prop/EBB46D52
.Rproj.user/F0159ABB/sdb/prop/ED906163
.Rproj.user/F0159ABB/sdb/prop/F75370A0
.Rproj.user/F0159ABB/sdb/prop/FA10572D
.Rproj.user/F0159ABB/sdb/prop/INDEX
.Rproj.user/F0159ABB/session-persistent-state
.Rproj.user/shared/notebooks/paths
DESCRIPTION
NAMESPACE
PICS.Rproj
R/.Rhistory
R/AllClasses.R R/AllGenerics.R R/TCGA.R R/correctp_cox.R R/getIndicCViAUCSurvROCTest.R R/logplik.R R/methods_FitGene.R R/methods_FitPath.R R/methods_Prefiltered.R R/pls_cox.R R/predict_pls_cox.R R/prefilter.R R/selectGene.R R/selectPath.R R/splsRcox_cv.R R/spls_cox.R R/spls_dv.R R/ust.R README.md
_config.yml
data/.Rapp.history
data/TCGA.RData
inst/doc/PICS-example.pdf man/FitGene-class.Rd man/FitPath-class.Rd man/Prefiltered-class.Rd man/TCGA.Rd man/coef-FitGene-method.Rd man/coef-FitPath-method.Rd man/prefilter.Rd man/selectGene-methods.Rd man/selectPath-methods.Rd man/show-FitGene-method.Rd man/show-FitPath-method.Rd man/show-Prefiltered-method.Rd
vignettes/PICS-example-concordance.tex
vignettes/PICS-example-plot.pdf vignettes/PICS-example-plot1.pdf vignettes/PICS-example-plot3.pdf
vignettes/PICS-example.Rnw
vignettes/PICS-example.aux
vignettes/PICS-example.log
vignettes/PICS-example.out
vignettes/PICS-example.pdf
vignettes/PICS-example.tex
sunny-zq/PICS documentation built on May 26, 2017, 10:05 p.m.