knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set( fig.path = "README_figs/README-" )
Big-LD is a block partition method based on interval graph modeling of LD bins which are clusters of strong pairwise LD SNPs, not necessarily physically consecutive. The detailed information about the Big-LD can be found in our paper published in bioinformatics.
The Big-LD algorithm and visualization function has been updated and implemented in a new package "gpart". The package "gpart" can be downloaded from bioconductor
The "gpart" has following features.
BigLD
functionnear-nonhrst
and fast
. LDblockHeatmap
functionGPART
LDblockHeatmap()
in "gpart" package.knitr::include_graphics("README_figs/README-heatmap_all.png")
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