Files in supatt-lab/r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

R/AllClasses.R R/AllGenerics.R R/Annotation.R R/Export.R R/FunctionInCommon.R R/FunctionsForBatchAnalysis.R R/FunctionsForNoReplicationAnalysis.R R/Report.R R/RestrictionEnzymeFunctions.R R/Visualize3Cseq.R README.md inst/doc/r3Cseq.R inst/doc/r3Cseq.pdf man/Myb_prom_FB.Rd man/Myb_prom_FL.Rd man/calculateBatchRPM.Rd man/calculateRPM.Rd man/contrCoverage.Rd man/contrInteractionRegions.Rd man/contrRPM.Rd man/contrRawData.Rd man/contrReadCount.Rd man/enzymeDb.Rd man/expCoverage.Rd man/expInteractionRegions.Rd man/expRPM.Rd man/expRawData.Rd man/expReadCount.Rd man/export3Cseq2bedGraph.Rd man/export3CseqRawReads2bedGraph.Rd man/exportBatchInteractions2text.Rd man/exportInteractions2text.Rd man/generate3CseqReport.Rd man/getBatchInteractions.Rd man/getBatchRawReads.Rd man/getBatchReadCountPerRestrictionFragment.Rd man/getBatchReadCountPerWindow.Rd man/getContrInteractionsInRefseq.Rd man/getCoverage.Rd man/getExpInteractionsInRefseq.Rd man/getInteractions.Rd man/getRawReads.Rd man/getReadCountPerRestrictionFragment.Rd man/getReadCountPerWindow.Rd man/getViewpoint.Rd man/hg18refGene.Rd man/hg19refGene.Rd man/mm10refGene.Rd man/mm9refGene.Rd man/plot3Cecdf.Rd man/plotDomainogramNearViewpoint.Rd man/plotInteractionsNearViewpoint.Rd man/plotInteractionsPerChromosome.Rd man/plotOverviewInteractions.Rd man/r3Cseq-class.Rd man/r3CseqCommon-class.Rd man/r3CseqInBatch-class.Rd man/rn5refGene.Rd vignettes/r3Cseq.Rmd