calculateBatchRPM: calculate read per million (RPM) for replicates analysis

In supatt-lab/r3Cseq: Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Description

Normalize 3C-Seq data by transforming raw reads to read per million per each region for replication analysis

Usage

calculateBatchRPM(object,normalized_method=c("powerlawFittedRPM","normalRPM"))

Arguments

object	r3CseqInBatch object
normalized_method	character. method of normalization (default=powerlawFittedRPM)

Author(s)

S. Thongjuea

See Also

calculateRPM, expRPM contrRPM

Examples

#See the vignette

supatt-lab/r3Cseq documentation built on May 6, 2019, 4:34 p.m.