API for superkits/CorMut
Detect the correlated mutations based on selection pressure
| Global functions | |
|---|---|
| CorMut | Man page |
| CorMut-package | Man page |
| JI-class | Man page |
| MI-class | Man page |
| biCkaksAA | Man page |
| biCkaksAA-class | Man page |
| biCkaksCodon | Man page |
| biCkaksCodon-class | Man page |
| biCompare | Man page |
| biCompare,biCkaksAA-method | Man page |
| biCompare,biCkaksCodon-method | Man page |
| biCompare,biJIAA-method | Man page |
| biCompare,biMIAA-method | Man page |
| biCompare,biMICodon-method | Man page |
| biCompare-class | Man page |
| biCompare-methods | Man page |
| biCompare.biCkaksAA | Man page |
| biCompare.biCkaksCodon | Man page |
| biCompare.biJIAA | Man page |
| biCompare.biMIAA | Man page |
| biCompare.biMICodon | Man page |
| biJIAA | Man page |
| biJIAA-class | Man page |
| biMIAA | Man page |
| biMIAA-class | Man page |
| biMICodon | Man page |
| biMICodon-class | Man page |
| ckaks | Man page |
| ckaks-class | Man page |
| ckaks.CorMut | Man page |
| ckaks.CorMut,ckaks-method | Man page |
| ckaksAA | Man page |
| ckaksCodon | Man page |
| filterSites | Man page |
| filterSites,JI-method | Man page |
| filterSites,MI-method | Man page |
| filterSites,ckaks-method | Man page |
| filterSites,kaksAA-method | Man page |
| filterSites,kaksCodon-method | Man page |
| filterSites-methods | Man page |
| filterSites.JI | Man page |
| filterSites.MI | Man page |
| filterSites.ckaks | Man page |
| filterSites.kaksAA | Man page |
| filterSites.kaksCodon | Man page |
| ji.CorMut,JI-method | Man page |
| jiAA | Man page |
| ka.CorMut | Man page |
| ka.CorMut,kaksAA-method | Man page |
| ka.CorMut,kaksCodon-method | Man page |
| kaks.CorMut | Man page |
| kaks.CorMut,kaksAA-method | Man page |
| kaks.CorMut,kaksCodon-method | Man page |
| kaksAA | Man page |
| kaksAA-class | Man page |
| kaksCodon | Man page |
| kaksCodon-class | Man page |
| ks.CorMut | Man page |
| ks.CorMut,kaksAA-method | Man page |
| ks.CorMut,kaksCodon-method | Man page |
| lod.CorMut | Man page |
| lod.CorMut,ckaks-method | Man page |
| lod.CorMut,kaksAA-method | Man page |
| lod.CorMut,kaksCodon-method | Man page |
| method.CorMut | Man page |
| method.CorMut,biCompare-method | Man page |
| mi.CorMut | Man page |
| mi.CorMut,MI-method | Man page |
| miAA | Man page |
| miCodon | Man page |
| p.value.CorMut | Man page |
| p.value.CorMut,JI-method | Man page |
| p.value.CorMut,MI-method | Man page |
| plot | Man page |
| plot,JI-method | Man page |
| plot,MI-method | Man page |
| plot,biCompare-method | Man page |
| plot,ckaks-method | Man page |
| plot.JI | Man page |
| plot.MI | Man page |
| plot.biCompare | Man page |
| plot.ckaks | Man page |
| positiveSite01.CorMut | Man page |
| positiveSite01.CorMut,biCompare-method | Man page |
| positiveSite02.CorMut | Man page |
| positiveSite02.CorMut,biCompare-method | Man page |
| q.CorMut | Man page |
| q.CorMut,kaksAA-method | Man page |
| q.CorMut,kaksCodon-method | Man page |
| seqFormat | Man page |
| seqFormat-methods | Man page |
| seq_num.CorMut | Man page |
| seq_num.CorMut,kaksAA-method | Man page |
| seq_num.CorMut,kaksCodon-method | Man page |
| show,JI-method | Man page |
| show,MI-method | Man page |
| show,biCkaksAA-method | Man page |
| show,biCkaksCodon-method | Man page |
| show,biMIAA-method | Man page |
| show,biMICodon-method | Man page |
| show,ckaks-method | Man page |
| show,kaksAA-method | Man page |
| show,kaksCodon-method | Man page |
| state_1.CorMut | Man page |
| state_1.CorMut,biCompare-method | Man page |
| state_2.CorMut | Man page |
| state_2.CorMut,biCompare-method | Man page |
| statistic_1.CorMut | Man page |
| statistic_1.CorMut,biCompare-method | Man page |
| statistic_2.CorMut | Man page |
| statistic_2.CorMut,biCompare-method | Man page |
