JI-class: Class "JI"

In superkits/CorMut: Detect the correlated mutations based on selection pressure

Description

JI class for representing the jiAA results

Slots

JI:

Object of class "matrix". Mutual information among codons or amino mutations

p.value:

Object of class "matrix". P value for the significance of correlated mutations

OR:

Object of class "matrix". Odds Ratios for the correlated mutations

Methods

filterSites

signature(object = "MI"): Filter positive selection amino mutations for objects of MI class.

plot

signature(object = "MI"): Plot the influence interaction among mutations for objects of MI class.

See Also

miAA,filterSites

Examples

#examplefile=system.file("extdata","PI_treatment.aln",package="CorMut")
#example=seqFormat(examplefile)
#result=jiAA(example)

superkits/CorMut documentation built on May 8, 2019, 11:59 p.m.