build_drugcandy.r

In suryakevin/drugcandy: Detecting Punctuated Evolution in Dinosaurs and Viruses

# written by Kevin Surya
# see https://r-pkgs.org/index.html

# load the `R` package "devtools" ----
library(devtools)
## make sure that "devtools" is up-to-date

# create the `R` package "drugcandy" ----
## execute in `RStudio`
create_package(path = "drugcandy")

# reload "devtools" ---
library(devtools)

# write .r function files ----

# edit DESCRIPTION ----

# pick a license ----
use_mit_license()

# write README.md ----

# create documentation and generate NAMESPACE ----
document()

# check "drugcandy" ----
check()
#> i Updating drugcandy documentation
#> i Loading drugcandy
#> Writing NAMESPACE
#> Writing NAMESPACE
#> -- Building ------------------------------------------------------------------- drugcandy --
#> Setting env vars:
#> * CFLAGS    : -Wall -pedantic -fdiagnostics-color=always
#> * CXXFLAGS  : -Wall -pedantic -fdiagnostics-color=always
#> * CXX11FLAGS: -Wall -pedantic -fdiagnostics-color=always
#> * CXX14FLAGS: -Wall -pedantic -fdiagnostics-color=always
#> * CXX17FLAGS: -Wall -pedantic -fdiagnostics-color=always
#> * CXX20FLAGS: -Wall -pedantic -fdiagnostics-color=always
#> --------------------------------------------------------------------------------------------
#> √  checking for file 'C:\Users\sadik\Documents\GitHub\drugcandy/DESCRIPTION' ...
#> -  preparing 'drugcandy': (1.1s)
#> √  checking DESCRIPTION meta-information ... 
#> -  checking for LF line-endings in source and make files and shell scripts
#> -  checking for empty or unneeded directories
#> -  building 'drugcandy_1.0.0.tar.gz'
#>    
#> -- Checking ------------------------------------------------------------------- drugcandy --
#> Setting env vars:
#> * _R_CHECK_CRAN_INCOMING_REMOTE_: FALSE
#> * _R_CHECK_CRAN_INCOMING_       : FALSE
#> * _R_CHECK_FORCE_SUGGESTS_      : FALSE
#> * NOT_CRAN                      : true
#> -- R CMD check -----------------------------------------------------------------------------
#> -  using log directory 'C:/Users/sadik/AppData/Local/Temp/RtmpGEEgw5/drugcandy.Rcheck'
#> -  using R version 4.1.2 (2021-11-01)
#> -  using platform: x86_64-w64-mingw32 (64-bit)
#> -  using session charset: ISO8859-1
#> -  using options '--no-manual --as-cran'
#> √  checking for file 'drugcandy/DESCRIPTION' ...
#> -  this is package 'drugcandy' version '1.0.0'
#> -  package encoding: UTF-8
#> √  checking package namespace information ...
#> √  checking package dependencies (2.2s)
#> √  checking if this is a source package
#> √  checking if there is a namespace
#> √  checking for executable files (585ms)
#> √  checking for hidden files and directories ... 
#> √  checking for portable file names ... 
#> √  checking serialization versions
#> √  checking whether package 'drugcandy' can be installed (8.6s)
#> √  checking installed package size ... 
#> √  checking package directory
#> √  checking for future file timestamps ... 
#> √  checking DESCRIPTION meta-information (363ms)
#> √  checking top-level files
#> √  checking for left-over files ...
#> √  checking index information
#> √  checking package subdirectories ... 
#> √  checking R files for non-ASCII characters ... 
#> √  checking R files for syntax errors ... 
#> √  checking whether the package can be loaded (2.1s)
#> √  checking whether the package can be loaded with stated dependencies (2.1s)
#> √  checking whether the package can be unloaded cleanly (2.2s)
#> √  checking whether the namespace can be loaded with stated dependencies (2.1s)
#> √  checking whether the namespace can be unloaded cleanly (2.2s)
#> √  checking dependencies in R code (2.1s)
#> √  checking S3 generic/method consistency (3.1s)
#> √  checking replacement functions (2.1s)
#> √  checking foreign function calls (2.1s)
#> √  checking R code for possible problems (10.3s)
#> √  checking Rd files ... 
#> √  checking Rd metadata ... 
#> √  checking Rd line widths ... 
#> √  checking Rd cross-references ... 
#> √  checking for missing documentation entries (2s)
#> √  checking for code/documentation mismatches (6.1s)
#> √  checking Rd \usage sections (3.4s)
#> √  checking Rd contents ... 
#> √  checking for unstated dependencies in examples ... 
#> -  checking examples ... NONE
#> √  checking for non-standard things in the check directory
#> √  checking for detritus in the temp directory
#>    
#>    
#> -- R CMD check results ------------------------------------------------ drugcandy 1.0.0 ----
#> Duration: 1m 0.2s
#> 
#> 0 errors √ | 0 warnings √ | 0 notes √

# clean and store external data ----

# create vignette ----

# render "drugcandy" as a git repo ----
use_git()

# create a new GitHub repo with the same name as the package ----

# synchronize the local git repo with the GitHub repo ----
#> git remote add origin git@github.com:hadley/r-pkgs.git
#> git push -u origin master