| approx.cos | Piecewise cosine interpolation |
| assign.scale.colors | Assign colors to value according to a scale |
| bin.ints | Integer data binning |
| display.pal | Display colors in a palette |
| draw.chrom.axis | Draw a horizontal chromosome axis |
| draw.old.scale | Draw a color scale bar (old version) |
| draw.scale | Draw a color scale bar |
| fastqq | Fast QQ plots |
| find.bins | Find breakpoints for binning numeric values |
| image0 | More useful defaults for plotting matrices |
| label.bins | Label bins generated by 'find.bins()' |
| load.gene.mart | Load gene database alternate version or organism. |
| marginlabels | Label points from the margin |
| mrange | Calculate a range with margins (padding) |
| mur | Find a minimal unique representation |
| prettybp | Print a bp length nicely |
| rlcps | Remove longest common prefix and suffix |
| splitter | Calculate offsets for plotting y ~ x scatter plots where y is... |
| stackplot | Stacked plots |
| thin | Sampling for qq plots |
| y.scale.bar | Y axis scale bar for stacked plots |
| zoom.plot | Zoom in manhattan plot with gene models and LD plotted below. |
| zoom.plot-package | Various functions for plotting genomic data |
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