load.gene.mart: Load gene database alternate version or organism.

In sushilashenoy/zoom.plot: Modular zoom plots for genomic data

Description

By default we will look up human (hg38) gene models. This function should be called once after the package is loaded to use a different biomart database.

Usage

load.gene.mart(version = "hg38", biomart.host, biomart.fields,
  biomart.filters, biomart.mart, biomart.dataset)

Examples

# To use hg37 genomic coordinates
load.gene.mart('hg37')

# To use drosophila gene models
load.gene.mart('BDGP5')

# To use mouse gene models:
load.gene.mart(biomart.dataset='mmusculus_gene_ensembl',
               biomart.filters=NULL,
               biomart.filter.values=NULL)

sushilashenoy/zoom.plot documentation built on May 30, 2019, 8:42 p.m.